Cargando…
Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa
The GRAS transcription factor is an important transcription factor in plants. In recent years, more GRAS genes have been identified in many plant species. However, the GRAS gene family has not yet been studied in Avena sativa. We identified 100 members of the GRAS gene family in A. sativa (Avena sat...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9858933/ https://www.ncbi.nlm.nih.gov/pubmed/36672905 http://dx.doi.org/10.3390/genes14010164 |
_version_ | 1784874228997160960 |
---|---|
author | Ling, Lei Li, Mingjing Chen, Naiyu Ren, Guoling Qu, Lina Yue, Hua Wu, Xinyu Zhao, Jing |
author_facet | Ling, Lei Li, Mingjing Chen, Naiyu Ren, Guoling Qu, Lina Yue, Hua Wu, Xinyu Zhao, Jing |
author_sort | Ling, Lei |
collection | PubMed |
description | The GRAS transcription factor is an important transcription factor in plants. In recent years, more GRAS genes have been identified in many plant species. However, the GRAS gene family has not yet been studied in Avena sativa. We identified 100 members of the GRAS gene family in A. sativa (Avena sativa), named them AsGRAS1~AsGRAS100 according to the positions of 21 chromosomes, and classified them into 9 subfamilies. In this study, the motif and gene structures were also relatively conserved in the same subfamilies. At the same time, we found a great deal related to the stress of cis-acting promoter regulatory elements (MBS, ABRE, and TC-rich repeat elements). qRT-PCR suggested that the AsGRAS gene family (GRAS gene family in A. sativa) can regulate the response to salt, saline–alkali, and cold and freezing abiotic stresses. The current study provides original and detailed information about the AsGRAS gene family, which contributes to the functional characterization of GRAS proteins in other plants. |
format | Online Article Text |
id | pubmed-9858933 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-98589332023-01-21 Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa Ling, Lei Li, Mingjing Chen, Naiyu Ren, Guoling Qu, Lina Yue, Hua Wu, Xinyu Zhao, Jing Genes (Basel) Project Report The GRAS transcription factor is an important transcription factor in plants. In recent years, more GRAS genes have been identified in many plant species. However, the GRAS gene family has not yet been studied in Avena sativa. We identified 100 members of the GRAS gene family in A. sativa (Avena sativa), named them AsGRAS1~AsGRAS100 according to the positions of 21 chromosomes, and classified them into 9 subfamilies. In this study, the motif and gene structures were also relatively conserved in the same subfamilies. At the same time, we found a great deal related to the stress of cis-acting promoter regulatory elements (MBS, ABRE, and TC-rich repeat elements). qRT-PCR suggested that the AsGRAS gene family (GRAS gene family in A. sativa) can regulate the response to salt, saline–alkali, and cold and freezing abiotic stresses. The current study provides original and detailed information about the AsGRAS gene family, which contributes to the functional characterization of GRAS proteins in other plants. MDPI 2023-01-06 /pmc/articles/PMC9858933/ /pubmed/36672905 http://dx.doi.org/10.3390/genes14010164 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Project Report Ling, Lei Li, Mingjing Chen, Naiyu Ren, Guoling Qu, Lina Yue, Hua Wu, Xinyu Zhao, Jing Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa |
title | Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa |
title_full | Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa |
title_fullStr | Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa |
title_full_unstemmed | Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa |
title_short | Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa |
title_sort | genome-wide analysis and expression of the gras transcription factor family in avena sativa |
topic | Project Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9858933/ https://www.ncbi.nlm.nih.gov/pubmed/36672905 http://dx.doi.org/10.3390/genes14010164 |
work_keys_str_mv | AT linglei genomewideanalysisandexpressionofthegrastranscriptionfactorfamilyinavenasativa AT limingjing genomewideanalysisandexpressionofthegrastranscriptionfactorfamilyinavenasativa AT chennaiyu genomewideanalysisandexpressionofthegrastranscriptionfactorfamilyinavenasativa AT renguoling genomewideanalysisandexpressionofthegrastranscriptionfactorfamilyinavenasativa AT qulina genomewideanalysisandexpressionofthegrastranscriptionfactorfamilyinavenasativa AT yuehua genomewideanalysisandexpressionofthegrastranscriptionfactorfamilyinavenasativa AT wuxinyu genomewideanalysisandexpressionofthegrastranscriptionfactorfamilyinavenasativa AT zhaojing genomewideanalysisandexpressionofthegrastranscriptionfactorfamilyinavenasativa |