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Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa

The GRAS transcription factor is an important transcription factor in plants. In recent years, more GRAS genes have been identified in many plant species. However, the GRAS gene family has not yet been studied in Avena sativa. We identified 100 members of the GRAS gene family in A. sativa (Avena sat...

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Autores principales: Ling, Lei, Li, Mingjing, Chen, Naiyu, Ren, Guoling, Qu, Lina, Yue, Hua, Wu, Xinyu, Zhao, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9858933/
https://www.ncbi.nlm.nih.gov/pubmed/36672905
http://dx.doi.org/10.3390/genes14010164
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author Ling, Lei
Li, Mingjing
Chen, Naiyu
Ren, Guoling
Qu, Lina
Yue, Hua
Wu, Xinyu
Zhao, Jing
author_facet Ling, Lei
Li, Mingjing
Chen, Naiyu
Ren, Guoling
Qu, Lina
Yue, Hua
Wu, Xinyu
Zhao, Jing
author_sort Ling, Lei
collection PubMed
description The GRAS transcription factor is an important transcription factor in plants. In recent years, more GRAS genes have been identified in many plant species. However, the GRAS gene family has not yet been studied in Avena sativa. We identified 100 members of the GRAS gene family in A. sativa (Avena sativa), named them AsGRAS1~AsGRAS100 according to the positions of 21 chromosomes, and classified them into 9 subfamilies. In this study, the motif and gene structures were also relatively conserved in the same subfamilies. At the same time, we found a great deal related to the stress of cis-acting promoter regulatory elements (MBS, ABRE, and TC-rich repeat elements). qRT-PCR suggested that the AsGRAS gene family (GRAS gene family in A. sativa) can regulate the response to salt, saline–alkali, and cold and freezing abiotic stresses. The current study provides original and detailed information about the AsGRAS gene family, which contributes to the functional characterization of GRAS proteins in other plants.
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spelling pubmed-98589332023-01-21 Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa Ling, Lei Li, Mingjing Chen, Naiyu Ren, Guoling Qu, Lina Yue, Hua Wu, Xinyu Zhao, Jing Genes (Basel) Project Report The GRAS transcription factor is an important transcription factor in plants. In recent years, more GRAS genes have been identified in many plant species. However, the GRAS gene family has not yet been studied in Avena sativa. We identified 100 members of the GRAS gene family in A. sativa (Avena sativa), named them AsGRAS1~AsGRAS100 according to the positions of 21 chromosomes, and classified them into 9 subfamilies. In this study, the motif and gene structures were also relatively conserved in the same subfamilies. At the same time, we found a great deal related to the stress of cis-acting promoter regulatory elements (MBS, ABRE, and TC-rich repeat elements). qRT-PCR suggested that the AsGRAS gene family (GRAS gene family in A. sativa) can regulate the response to salt, saline–alkali, and cold and freezing abiotic stresses. The current study provides original and detailed information about the AsGRAS gene family, which contributes to the functional characterization of GRAS proteins in other plants. MDPI 2023-01-06 /pmc/articles/PMC9858933/ /pubmed/36672905 http://dx.doi.org/10.3390/genes14010164 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Project Report
Ling, Lei
Li, Mingjing
Chen, Naiyu
Ren, Guoling
Qu, Lina
Yue, Hua
Wu, Xinyu
Zhao, Jing
Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa
title Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa
title_full Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa
title_fullStr Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa
title_full_unstemmed Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa
title_short Genome-Wide Analysis and Expression of the GRAS Transcription Factor Family in Avena sativa
title_sort genome-wide analysis and expression of the gras transcription factor family in avena sativa
topic Project Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9858933/
https://www.ncbi.nlm.nih.gov/pubmed/36672905
http://dx.doi.org/10.3390/genes14010164
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