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An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma

Pancreatic adenocarcinoma (PAAD) is a common, highly malignant, and aggressive gastrointestinal tumor. The conventional treatment of PAAD shows poor results, and patients have poor prognosis. The synthesis and degradation of proteins are essential for the occurrence and development of tumors. Aggrep...

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Autores principales: Huang, Xueyuan, Chi, Hao, Gou, Siqi, Guo, Xiyuan, Li, Lin, Peng, Gaoge, Zhang, Jinhao, Xu, Jiayu, Nian, Siji, Yuan, Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9859148/
https://www.ncbi.nlm.nih.gov/pubmed/36672865
http://dx.doi.org/10.3390/genes14010124
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author Huang, Xueyuan
Chi, Hao
Gou, Siqi
Guo, Xiyuan
Li, Lin
Peng, Gaoge
Zhang, Jinhao
Xu, Jiayu
Nian, Siji
Yuan, Qing
author_facet Huang, Xueyuan
Chi, Hao
Gou, Siqi
Guo, Xiyuan
Li, Lin
Peng, Gaoge
Zhang, Jinhao
Xu, Jiayu
Nian, Siji
Yuan, Qing
author_sort Huang, Xueyuan
collection PubMed
description Pancreatic adenocarcinoma (PAAD) is a common, highly malignant, and aggressive gastrointestinal tumor. The conventional treatment of PAAD shows poor results, and patients have poor prognosis. The synthesis and degradation of proteins are essential for the occurrence and development of tumors. Aggrephagy is a type of autophagy that selectively degrades aggregated proteins. It decreases the formation of aggregates by degrading proteins, thus reducing the harm to cells. By breaking down proteins, it decreases the formation of aggregates; thus, minimizing damage to cells. For evaluating the response to immunotherapy and prognosis in PAAD patients, in this study, we developed a reliable signature based on aggrephagy-related genes (ARGs). We obtained 298 AGGLncRNAs. Based on the results of one-way Cox and LASSO analyses, the lncRNA signature was constructed. In the risk model, the prognosis of patients in the low-risk group was noticeably better than that of the patients in the high-risk group. Additionally, the ROC curves and nomograms validated the capacity of the risk model to predict the prognosis of PAAD. The patients in the low-risk and high-risk groups showed considerable variations in functional enrichment and immunological analysis. Regarding drug sensitivity, the low-risk and high-risk groups had different half-maximal inhibitory concentrations (IC50).
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spelling pubmed-98591482023-01-21 An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma Huang, Xueyuan Chi, Hao Gou, Siqi Guo, Xiyuan Li, Lin Peng, Gaoge Zhang, Jinhao Xu, Jiayu Nian, Siji Yuan, Qing Genes (Basel) Article Pancreatic adenocarcinoma (PAAD) is a common, highly malignant, and aggressive gastrointestinal tumor. The conventional treatment of PAAD shows poor results, and patients have poor prognosis. The synthesis and degradation of proteins are essential for the occurrence and development of tumors. Aggrephagy is a type of autophagy that selectively degrades aggregated proteins. It decreases the formation of aggregates by degrading proteins, thus reducing the harm to cells. By breaking down proteins, it decreases the formation of aggregates; thus, minimizing damage to cells. For evaluating the response to immunotherapy and prognosis in PAAD patients, in this study, we developed a reliable signature based on aggrephagy-related genes (ARGs). We obtained 298 AGGLncRNAs. Based on the results of one-way Cox and LASSO analyses, the lncRNA signature was constructed. In the risk model, the prognosis of patients in the low-risk group was noticeably better than that of the patients in the high-risk group. Additionally, the ROC curves and nomograms validated the capacity of the risk model to predict the prognosis of PAAD. The patients in the low-risk and high-risk groups showed considerable variations in functional enrichment and immunological analysis. Regarding drug sensitivity, the low-risk and high-risk groups had different half-maximal inhibitory concentrations (IC50). MDPI 2023-01-02 /pmc/articles/PMC9859148/ /pubmed/36672865 http://dx.doi.org/10.3390/genes14010124 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Huang, Xueyuan
Chi, Hao
Gou, Siqi
Guo, Xiyuan
Li, Lin
Peng, Gaoge
Zhang, Jinhao
Xu, Jiayu
Nian, Siji
Yuan, Qing
An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma
title An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma
title_full An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma
title_fullStr An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma
title_full_unstemmed An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma
title_short An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma
title_sort aggrephagy-related lncrna signature for the prognosis of pancreatic adenocarcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9859148/
https://www.ncbi.nlm.nih.gov/pubmed/36672865
http://dx.doi.org/10.3390/genes14010124
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