Cargando…
An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma
Pancreatic adenocarcinoma (PAAD) is a common, highly malignant, and aggressive gastrointestinal tumor. The conventional treatment of PAAD shows poor results, and patients have poor prognosis. The synthesis and degradation of proteins are essential for the occurrence and development of tumors. Aggrep...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9859148/ https://www.ncbi.nlm.nih.gov/pubmed/36672865 http://dx.doi.org/10.3390/genes14010124 |
_version_ | 1784874282948493312 |
---|---|
author | Huang, Xueyuan Chi, Hao Gou, Siqi Guo, Xiyuan Li, Lin Peng, Gaoge Zhang, Jinhao Xu, Jiayu Nian, Siji Yuan, Qing |
author_facet | Huang, Xueyuan Chi, Hao Gou, Siqi Guo, Xiyuan Li, Lin Peng, Gaoge Zhang, Jinhao Xu, Jiayu Nian, Siji Yuan, Qing |
author_sort | Huang, Xueyuan |
collection | PubMed |
description | Pancreatic adenocarcinoma (PAAD) is a common, highly malignant, and aggressive gastrointestinal tumor. The conventional treatment of PAAD shows poor results, and patients have poor prognosis. The synthesis and degradation of proteins are essential for the occurrence and development of tumors. Aggrephagy is a type of autophagy that selectively degrades aggregated proteins. It decreases the formation of aggregates by degrading proteins, thus reducing the harm to cells. By breaking down proteins, it decreases the formation of aggregates; thus, minimizing damage to cells. For evaluating the response to immunotherapy and prognosis in PAAD patients, in this study, we developed a reliable signature based on aggrephagy-related genes (ARGs). We obtained 298 AGGLncRNAs. Based on the results of one-way Cox and LASSO analyses, the lncRNA signature was constructed. In the risk model, the prognosis of patients in the low-risk group was noticeably better than that of the patients in the high-risk group. Additionally, the ROC curves and nomograms validated the capacity of the risk model to predict the prognosis of PAAD. The patients in the low-risk and high-risk groups showed considerable variations in functional enrichment and immunological analysis. Regarding drug sensitivity, the low-risk and high-risk groups had different half-maximal inhibitory concentrations (IC50). |
format | Online Article Text |
id | pubmed-9859148 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-98591482023-01-21 An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma Huang, Xueyuan Chi, Hao Gou, Siqi Guo, Xiyuan Li, Lin Peng, Gaoge Zhang, Jinhao Xu, Jiayu Nian, Siji Yuan, Qing Genes (Basel) Article Pancreatic adenocarcinoma (PAAD) is a common, highly malignant, and aggressive gastrointestinal tumor. The conventional treatment of PAAD shows poor results, and patients have poor prognosis. The synthesis and degradation of proteins are essential for the occurrence and development of tumors. Aggrephagy is a type of autophagy that selectively degrades aggregated proteins. It decreases the formation of aggregates by degrading proteins, thus reducing the harm to cells. By breaking down proteins, it decreases the formation of aggregates; thus, minimizing damage to cells. For evaluating the response to immunotherapy and prognosis in PAAD patients, in this study, we developed a reliable signature based on aggrephagy-related genes (ARGs). We obtained 298 AGGLncRNAs. Based on the results of one-way Cox and LASSO analyses, the lncRNA signature was constructed. In the risk model, the prognosis of patients in the low-risk group was noticeably better than that of the patients in the high-risk group. Additionally, the ROC curves and nomograms validated the capacity of the risk model to predict the prognosis of PAAD. The patients in the low-risk and high-risk groups showed considerable variations in functional enrichment and immunological analysis. Regarding drug sensitivity, the low-risk and high-risk groups had different half-maximal inhibitory concentrations (IC50). MDPI 2023-01-02 /pmc/articles/PMC9859148/ /pubmed/36672865 http://dx.doi.org/10.3390/genes14010124 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Huang, Xueyuan Chi, Hao Gou, Siqi Guo, Xiyuan Li, Lin Peng, Gaoge Zhang, Jinhao Xu, Jiayu Nian, Siji Yuan, Qing An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma |
title | An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma |
title_full | An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma |
title_fullStr | An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma |
title_full_unstemmed | An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma |
title_short | An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma |
title_sort | aggrephagy-related lncrna signature for the prognosis of pancreatic adenocarcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9859148/ https://www.ncbi.nlm.nih.gov/pubmed/36672865 http://dx.doi.org/10.3390/genes14010124 |
work_keys_str_mv | AT huangxueyuan anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT chihao anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT gousiqi anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT guoxiyuan anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT lilin anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT penggaoge anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT zhangjinhao anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT xujiayu anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT niansiji anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT yuanqing anaggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT huangxueyuan aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT chihao aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT gousiqi aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT guoxiyuan aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT lilin aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT penggaoge aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT zhangjinhao aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT xujiayu aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT niansiji aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma AT yuanqing aggrephagyrelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma |