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Effective smMIPs-Based Sequencing of Maculopathy-Associated Genes in Stargardt Disease Cases and Allied Maculopathies from the UK

Macular dystrophies are a group of individually rare but collectively common inherited retinal dystrophies characterised by central vision loss and loss of visual acuity. Single molecule Molecular Inversion Probes (smMIPs) have proved effective in identifying genetic variants causing macular dystrop...

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Autores principales: Mc Clinton, Benjamin, Corradi, Zelia, McKibbin, Martin, Panneman, Daan M., Roosing, Susanne, Boonen, Erica G. M., Ali, Manir, Watson, Christopher M., Steel, David H., Cremers, Frans P. M., Inglehearn, Chris F., Hitti-Malin, Rebekkah J., Toomes, Carmel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9859292/
https://www.ncbi.nlm.nih.gov/pubmed/36672932
http://dx.doi.org/10.3390/genes14010191
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author Mc Clinton, Benjamin
Corradi, Zelia
McKibbin, Martin
Panneman, Daan M.
Roosing, Susanne
Boonen, Erica G. M.
Ali, Manir
Watson, Christopher M.
Steel, David H.
Cremers, Frans P. M.
Inglehearn, Chris F.
Hitti-Malin, Rebekkah J.
Toomes, Carmel
author_facet Mc Clinton, Benjamin
Corradi, Zelia
McKibbin, Martin
Panneman, Daan M.
Roosing, Susanne
Boonen, Erica G. M.
Ali, Manir
Watson, Christopher M.
Steel, David H.
Cremers, Frans P. M.
Inglehearn, Chris F.
Hitti-Malin, Rebekkah J.
Toomes, Carmel
author_sort Mc Clinton, Benjamin
collection PubMed
description Macular dystrophies are a group of individually rare but collectively common inherited retinal dystrophies characterised by central vision loss and loss of visual acuity. Single molecule Molecular Inversion Probes (smMIPs) have proved effective in identifying genetic variants causing macular dystrophy. Here, a previously established smMIPs panel tailored for genes associated with macular diseases has been used to examine 57 UK macular dystrophy cases, achieving a high solve rate of 63.2% (36/57). Among 27 bi-allelic STGD1 cases, only three novel ABCA4 variants were identified, illustrating that the majority of ABCA4 variants in Caucasian STGD1 cases are currently known. We examined cases with ABCA4-associated disease in detail, comparing our results with a previously reported variant grading system, and found this model to be accurate and clinically useful. In this study, we showed that ABCA4-associated disease could be distinguished from other forms of macular dystrophy based on clinical evaluation in the majority of cases (34/36)
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spelling pubmed-98592922023-01-21 Effective smMIPs-Based Sequencing of Maculopathy-Associated Genes in Stargardt Disease Cases and Allied Maculopathies from the UK Mc Clinton, Benjamin Corradi, Zelia McKibbin, Martin Panneman, Daan M. Roosing, Susanne Boonen, Erica G. M. Ali, Manir Watson, Christopher M. Steel, David H. Cremers, Frans P. M. Inglehearn, Chris F. Hitti-Malin, Rebekkah J. Toomes, Carmel Genes (Basel) Article Macular dystrophies are a group of individually rare but collectively common inherited retinal dystrophies characterised by central vision loss and loss of visual acuity. Single molecule Molecular Inversion Probes (smMIPs) have proved effective in identifying genetic variants causing macular dystrophy. Here, a previously established smMIPs panel tailored for genes associated with macular diseases has been used to examine 57 UK macular dystrophy cases, achieving a high solve rate of 63.2% (36/57). Among 27 bi-allelic STGD1 cases, only three novel ABCA4 variants were identified, illustrating that the majority of ABCA4 variants in Caucasian STGD1 cases are currently known. We examined cases with ABCA4-associated disease in detail, comparing our results with a previously reported variant grading system, and found this model to be accurate and clinically useful. In this study, we showed that ABCA4-associated disease could be distinguished from other forms of macular dystrophy based on clinical evaluation in the majority of cases (34/36) MDPI 2023-01-11 /pmc/articles/PMC9859292/ /pubmed/36672932 http://dx.doi.org/10.3390/genes14010191 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Mc Clinton, Benjamin
Corradi, Zelia
McKibbin, Martin
Panneman, Daan M.
Roosing, Susanne
Boonen, Erica G. M.
Ali, Manir
Watson, Christopher M.
Steel, David H.
Cremers, Frans P. M.
Inglehearn, Chris F.
Hitti-Malin, Rebekkah J.
Toomes, Carmel
Effective smMIPs-Based Sequencing of Maculopathy-Associated Genes in Stargardt Disease Cases and Allied Maculopathies from the UK
title Effective smMIPs-Based Sequencing of Maculopathy-Associated Genes in Stargardt Disease Cases and Allied Maculopathies from the UK
title_full Effective smMIPs-Based Sequencing of Maculopathy-Associated Genes in Stargardt Disease Cases and Allied Maculopathies from the UK
title_fullStr Effective smMIPs-Based Sequencing of Maculopathy-Associated Genes in Stargardt Disease Cases and Allied Maculopathies from the UK
title_full_unstemmed Effective smMIPs-Based Sequencing of Maculopathy-Associated Genes in Stargardt Disease Cases and Allied Maculopathies from the UK
title_short Effective smMIPs-Based Sequencing of Maculopathy-Associated Genes in Stargardt Disease Cases and Allied Maculopathies from the UK
title_sort effective smmips-based sequencing of maculopathy-associated genes in stargardt disease cases and allied maculopathies from the uk
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9859292/
https://www.ncbi.nlm.nih.gov/pubmed/36672932
http://dx.doi.org/10.3390/genes14010191
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