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An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach

The natural world is constantly changing, and planetary boundaries are issuing severe warnings about biodiversity and cycles of carbon, nitrogen, and phosphorus. In other views, social problems such as global warming and food shortages are spreading to various fields. These seemingly unrelated issue...

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Detalles Bibliográficos
Autores principales: Miyamoto, Hirokuni, Kikuchi, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9860287/
https://www.ncbi.nlm.nih.gov/pubmed/36698969
http://dx.doi.org/10.1016/j.csbj.2023.01.001
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author Miyamoto, Hirokuni
Kikuchi, Jun
author_facet Miyamoto, Hirokuni
Kikuchi, Jun
author_sort Miyamoto, Hirokuni
collection PubMed
description The natural world is constantly changing, and planetary boundaries are issuing severe warnings about biodiversity and cycles of carbon, nitrogen, and phosphorus. In other views, social problems such as global warming and food shortages are spreading to various fields. These seemingly unrelated issues are closely related, but it can be said that understanding them in an integrated manner is still a step away. However, progress in analytical technologies has been recognized in various fields and, from a microscopic perspective, with the development of instruments including next-generation sequencers (NGS), nuclear magnetic resonance (NMR), gas chromatography-mass spectrometry (GC/MS), and liquid chromatography-mass spectrometry (LC/MS), various forms of molecular information such as genome data, microflora structure, metabolome, proteome, and lipidome can be obtained. The development of new technology has made it possible to obtain molecular information in a variety of forms. From a macroscopic perspective, the development of environmental analytical instruments and environmental measurement facilities such as satellites, drones, observation ships, and semiconductor censors has increased the data availability for various environmental factors. Based on these background, the role of computational science is to provide a mechanism for integrating and understanding these seemingly disparate data sets. This review describes machine learning and the need for structural equations and statistical causal inference of these data to solve these problems. In addition to introducing actual examples of how these technologies can be utilized, we will discuss how to use these technologies to implement environmentally friendly technologies in society.
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spelling pubmed-98602872023-01-24 An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach Miyamoto, Hirokuni Kikuchi, Jun Comput Struct Biotechnol J Review Article The natural world is constantly changing, and planetary boundaries are issuing severe warnings about biodiversity and cycles of carbon, nitrogen, and phosphorus. In other views, social problems such as global warming and food shortages are spreading to various fields. These seemingly unrelated issues are closely related, but it can be said that understanding them in an integrated manner is still a step away. However, progress in analytical technologies has been recognized in various fields and, from a microscopic perspective, with the development of instruments including next-generation sequencers (NGS), nuclear magnetic resonance (NMR), gas chromatography-mass spectrometry (GC/MS), and liquid chromatography-mass spectrometry (LC/MS), various forms of molecular information such as genome data, microflora structure, metabolome, proteome, and lipidome can be obtained. The development of new technology has made it possible to obtain molecular information in a variety of forms. From a macroscopic perspective, the development of environmental analytical instruments and environmental measurement facilities such as satellites, drones, observation ships, and semiconductor censors has increased the data availability for various environmental factors. Based on these background, the role of computational science is to provide a mechanism for integrating and understanding these seemingly disparate data sets. This review describes machine learning and the need for structural equations and statistical causal inference of these data to solve these problems. In addition to introducing actual examples of how these technologies can be utilized, we will discuss how to use these technologies to implement environmentally friendly technologies in society. Research Network of Computational and Structural Biotechnology 2023-01-04 /pmc/articles/PMC9860287/ /pubmed/36698969 http://dx.doi.org/10.1016/j.csbj.2023.01.001 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Review Article
Miyamoto, Hirokuni
Kikuchi, Jun
An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach
title An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach
title_full An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach
title_fullStr An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach
title_full_unstemmed An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach
title_short An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach
title_sort evaluation of homeostatic plasticity for ecosystems using an analytical data science approach
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9860287/
https://www.ncbi.nlm.nih.gov/pubmed/36698969
http://dx.doi.org/10.1016/j.csbj.2023.01.001
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