Cargando…

MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics

Liquid chromatography coupled with bottom-up mass spectrometry (LC-MS/MS)–based proteomics is increasingly used to detect changes in posttranslational modifications (PTMs) in samples from different conditions. Analysis of data from such experiments faces numerous statistical challenges. These includ...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kohler, Devon, Tsai, Tsung-Heng, Verschueren, Erik, Huang, Ting, Hinkle, Trent, Phu, Lilian, Choi, Meena, Vitek, Olga
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Biochemistry and Molecular Biology 2022
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9860394/ https://www.ncbi.nlm.nih.gov/pubmed/36496144 http://dx.doi.org/10.1016/j.mcpro.2022.100477

Ejemplares similares

MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale
por: Kohler, Devon, et al.
Publicado: (2023)

MSstatsTMT: Statistical Detection of Differentially Abundant Proteins in Experiments with Isobaric Labeling and Multiple Mixtures
por: Huang, Ting, et al.
Publicado: (2020)

PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins
por: Craveur, Pierrick, et al.
Publicado: (2014)

PTM-Switchboard—a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes
por: Everett, Logan, et al.
Publicado: (2009)

topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins
por: Su, Min-Gang, et al.
Publicado: (2014)

qPTM: an updated database for PTM dynamics in human, mouse, rat and yeast
por: Yu, Kai, et al.
Publicado: (2022)

Decoding the PTM-switchboard of Notch
por: Antfolk, Daniel, et al.
Publicado: (2019)

Utilizing Optimized Tools to Investigate PTM Crosstalk: Identifying Potential PTM Crosstalk of Acetylated Mitochondrial Proteins
por: Horita, Henrick, et al.
Publicado: (2018)

ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry
por: Zamdborg, Leonid, et al.
Publicado: (2007)

Cells, shared memory and breaking the PTM code
por: Creixell, Pau, et al.
Publicado: (2012)

FAIMS Enhances the Detection of PTM Crosstalk Sites
por: Adoni, Kish R., et al.
Publicado: (2022)

Mass Spectrometry-Based Detection and Assignment of Protein Posttranslational Modifications
por: Doll, Sophia, et al.
Publicado: (2014)

Deciphering the PTM codes of the tumor suppressor p53
por: Wen, Jia, et al.
Publicado: (2021)

Quantitative profiling of PTM stoichiometry by resolvable mass tags
por: Chen, Ying, et al.
Publicado: (2022)

dbPTM: an information repository of protein post-translational modification
por: Lee, Tzong-Yi, et al.
Publicado: (2006)

An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia
por: Provez, Lien, et al.
Publicado: (2022)

Engineering posttranslational proofreading to discriminate nonstandard amino acids
por: Kunjapur, Aditya M., et al.
Publicado: (2018)

Networking of predicted post-translational modification (PTM) sites in human EGFR
por: Malik, Arshi, et al.
Publicado: (2019)

The Burden of Post-Translational Modification (PTM)—Disrupting Mutations in the Tumor Matrisome
por: Holstein, Elisa, et al.
Publicado: (2021)

PTMint database of experimentally verified PTM regulation on protein–protein interaction
por: Hong, Xiaokun, et al.
Publicado: (2022)

Identification of Posttranslational Modifications in Peroxisome Proliferator-Activated Receptor γ Using Mass Spectrometry
por: Katsura, Shogo, et al.
Publicado: (2014)

One minute analysis of 200 histone posttranslational modifications by direct injection mass spectrometry
por: Sidoli, Simone, et al.
Publicado: (2019)

Posttranslational Chemical Mutagenesis Methods to Insert Posttranslational Modifications into Recombinant Proteins
por: Harel, Omer, et al.
Publicado: (2022)

SysPTM 2.0: an updated systematic resource for post-translational modification
por: Li, Jing, et al.
Publicado: (2014)

Bioinformatic and Proteomic Analysis of Bulk Histones Reveals PTM Crosstalk and Chromatin Features
por: Zhang, Chunchao, et al.
Publicado: (2014)

A qualitative study of implementation and adaptations to Progressive Tinnitus Management (PTM) delivery
por: Tuepker, Anaïs, et al.
Publicado: (2018)

MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics
por: Polasky, Daniel A., et al.
Publicado: (2023)

Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis
por: Mikula, Michal, et al.
Publicado: (2015)

Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response
por: Maculins, Timurs, et al.
Publicado: (2021)

Posttranslational Modifications in Ferroptosis
por: Wei, Xiang, et al.
Publicado: (2020)

Targeted Bottom–Up Mass Spectrometry Approach for the Relative Quantification of Post-Translational Modification of Bovine κ-Casein during Milk Fermentation
por: Sagu, Sorel Tchewonpi, et al.
Publicado: (2022)

Physico-Technical Medicine (PTM) - a new Master-Online study course for physicians
por: Guttmann, Josef, et al.
Publicado: (2011)

Precision temperature monitoring (PTM) and Humidity monitoring (HM) sensors of the CMS electromagnetic calorimeter
Publicado: (2006)

Isobar(PTM): A software tool for the quantitative analysis of post-translationally modified proteins()
por: Breitwieser, Florian P., et al.
Publicado: (2013)

dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications
por: Huang, Kai-Yao, et al.
Publicado: (2019)

PTMphinder: an R package for PTM site localization and motif extraction from proteomic datasets
por: Wozniak, Jacob M., et al.
Publicado: (2019)

Proteomic and molecular dynamic investigations of PTM-induced structural fluctuations in breast and ovarian cancer
por: Tikhonov, Dmitry, et al.
Publicado: (2021)

Computational identification of multiple lysine PTM sites by analyzing the instance hardness and feature importance
por: Ahmed, Sabit, et al.
Publicado: (2021)

Post-translational modifications (PTM): analytical approaches, signaling, physiology and pathophysiology—part I
por: Tsikas, Dimitrios
Publicado: (2021)

“Posbindu PTM”: The Key of Early Detection and Decreasing Prevalence of Non-Communicable Diseases in Indonesia
por: Siswati, Tri, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_2cafuarjm4nmaq5kk9ud4gso25