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First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications

Complete mitochondrial genomes of three species of the family Buprestidae were sequenced, annotated, and analyzed in this study. To explore the mitogenome features of the subfamily Julodinae and verify its phylogenetic position, the complete mitogenome of Julodisvariolaris was sequenced and annotate...

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Autores principales: Wei, Zhonghua, Huang, Xuyan, Shi, Aimin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9860506/
https://www.ncbi.nlm.nih.gov/pubmed/36761279
http://dx.doi.org/10.3897/zookeys.1139.96216
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author Wei, Zhonghua
Huang, Xuyan
Shi, Aimin
author_facet Wei, Zhonghua
Huang, Xuyan
Shi, Aimin
author_sort Wei, Zhonghua
collection PubMed
description Complete mitochondrial genomes of three species of the family Buprestidae were sequenced, annotated, and analyzed in this study. To explore the mitogenome features of the subfamily Julodinae and verify its phylogenetic position, the complete mitogenome of Julodisvariolaris was sequenced and annotated. The complete mitogenomes of Ptosimachinensis and Chalcophorajaponica were also provided for the phylogenetic analyses within Buprestidae. Compared to the known mitogenomes of Buprestidae species varied from 15,499 bp to 16,771 bp in length, three newly sequenced mitogenomes were medium length (15,759–16,227 bp). These mitogenomes were encoded 37 typical mitochondrial genes. Among the three studied mitogenomes, Leu2 (L2), Ser2 (S2), and Pro (P) were the three most frequently encoded amino acids. Within the Buprestidae, the heterogeneity in sequence divergences of Agrilinae was highest, whereas the sequence homogeneity of Chrysochroinae was highest. Moreover, phylogenetic analyses were performed based on nucleotide matrix (13 PCGs + 2 rRNAs) among the available sequenced species of Buprestidae using Bayesian Inference and Maximum Likelihood methods. The results showed that the Julodinae was closely related to the subfamily Polycestinae. Meanwhile, the genera Melanophila, Dicerca, and Coomaniella were included in Buprestinae, which was inconsistent with the current classification system of Buprestidae. These results could contribute to further studies on genetic diversity and phylogeny of Buprestidae.
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spelling pubmed-98605062023-02-08 First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications Wei, Zhonghua Huang, Xuyan Shi, Aimin Zookeys Research Article Complete mitochondrial genomes of three species of the family Buprestidae were sequenced, annotated, and analyzed in this study. To explore the mitogenome features of the subfamily Julodinae and verify its phylogenetic position, the complete mitogenome of Julodisvariolaris was sequenced and annotated. The complete mitogenomes of Ptosimachinensis and Chalcophorajaponica were also provided for the phylogenetic analyses within Buprestidae. Compared to the known mitogenomes of Buprestidae species varied from 15,499 bp to 16,771 bp in length, three newly sequenced mitogenomes were medium length (15,759–16,227 bp). These mitogenomes were encoded 37 typical mitochondrial genes. Among the three studied mitogenomes, Leu2 (L2), Ser2 (S2), and Pro (P) were the three most frequently encoded amino acids. Within the Buprestidae, the heterogeneity in sequence divergences of Agrilinae was highest, whereas the sequence homogeneity of Chrysochroinae was highest. Moreover, phylogenetic analyses were performed based on nucleotide matrix (13 PCGs + 2 rRNAs) among the available sequenced species of Buprestidae using Bayesian Inference and Maximum Likelihood methods. The results showed that the Julodinae was closely related to the subfamily Polycestinae. Meanwhile, the genera Melanophila, Dicerca, and Coomaniella were included in Buprestinae, which was inconsistent with the current classification system of Buprestidae. These results could contribute to further studies on genetic diversity and phylogeny of Buprestidae. Pensoft Publishers 2023-01-13 /pmc/articles/PMC9860506/ /pubmed/36761279 http://dx.doi.org/10.3897/zookeys.1139.96216 Text en Zhonghua Wei, Xuyan Huang, Aimin Shi https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Wei, Zhonghua
Huang, Xuyan
Shi, Aimin
First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications
title First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications
title_full First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications
title_fullStr First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications
title_full_unstemmed First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications
title_short First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications
title_sort first mitochondrial genome of subfamily julodinae (coleoptera, buprestidae) with its phylogenetic implications
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9860506/
https://www.ncbi.nlm.nih.gov/pubmed/36761279
http://dx.doi.org/10.3897/zookeys.1139.96216
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