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First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications
Complete mitochondrial genomes of three species of the family Buprestidae were sequenced, annotated, and analyzed in this study. To explore the mitogenome features of the subfamily Julodinae and verify its phylogenetic position, the complete mitogenome of Julodisvariolaris was sequenced and annotate...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Pensoft Publishers
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9860506/ https://www.ncbi.nlm.nih.gov/pubmed/36761279 http://dx.doi.org/10.3897/zookeys.1139.96216 |
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author | Wei, Zhonghua Huang, Xuyan Shi, Aimin |
author_facet | Wei, Zhonghua Huang, Xuyan Shi, Aimin |
author_sort | Wei, Zhonghua |
collection | PubMed |
description | Complete mitochondrial genomes of three species of the family Buprestidae were sequenced, annotated, and analyzed in this study. To explore the mitogenome features of the subfamily Julodinae and verify its phylogenetic position, the complete mitogenome of Julodisvariolaris was sequenced and annotated. The complete mitogenomes of Ptosimachinensis and Chalcophorajaponica were also provided for the phylogenetic analyses within Buprestidae. Compared to the known mitogenomes of Buprestidae species varied from 15,499 bp to 16,771 bp in length, three newly sequenced mitogenomes were medium length (15,759–16,227 bp). These mitogenomes were encoded 37 typical mitochondrial genes. Among the three studied mitogenomes, Leu2 (L2), Ser2 (S2), and Pro (P) were the three most frequently encoded amino acids. Within the Buprestidae, the heterogeneity in sequence divergences of Agrilinae was highest, whereas the sequence homogeneity of Chrysochroinae was highest. Moreover, phylogenetic analyses were performed based on nucleotide matrix (13 PCGs + 2 rRNAs) among the available sequenced species of Buprestidae using Bayesian Inference and Maximum Likelihood methods. The results showed that the Julodinae was closely related to the subfamily Polycestinae. Meanwhile, the genera Melanophila, Dicerca, and Coomaniella were included in Buprestinae, which was inconsistent with the current classification system of Buprestidae. These results could contribute to further studies on genetic diversity and phylogeny of Buprestidae. |
format | Online Article Text |
id | pubmed-9860506 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-98605062023-02-08 First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications Wei, Zhonghua Huang, Xuyan Shi, Aimin Zookeys Research Article Complete mitochondrial genomes of three species of the family Buprestidae were sequenced, annotated, and analyzed in this study. To explore the mitogenome features of the subfamily Julodinae and verify its phylogenetic position, the complete mitogenome of Julodisvariolaris was sequenced and annotated. The complete mitogenomes of Ptosimachinensis and Chalcophorajaponica were also provided for the phylogenetic analyses within Buprestidae. Compared to the known mitogenomes of Buprestidae species varied from 15,499 bp to 16,771 bp in length, three newly sequenced mitogenomes were medium length (15,759–16,227 bp). These mitogenomes were encoded 37 typical mitochondrial genes. Among the three studied mitogenomes, Leu2 (L2), Ser2 (S2), and Pro (P) were the three most frequently encoded amino acids. Within the Buprestidae, the heterogeneity in sequence divergences of Agrilinae was highest, whereas the sequence homogeneity of Chrysochroinae was highest. Moreover, phylogenetic analyses were performed based on nucleotide matrix (13 PCGs + 2 rRNAs) among the available sequenced species of Buprestidae using Bayesian Inference and Maximum Likelihood methods. The results showed that the Julodinae was closely related to the subfamily Polycestinae. Meanwhile, the genera Melanophila, Dicerca, and Coomaniella were included in Buprestinae, which was inconsistent with the current classification system of Buprestidae. These results could contribute to further studies on genetic diversity and phylogeny of Buprestidae. Pensoft Publishers 2023-01-13 /pmc/articles/PMC9860506/ /pubmed/36761279 http://dx.doi.org/10.3897/zookeys.1139.96216 Text en Zhonghua Wei, Xuyan Huang, Aimin Shi https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Wei, Zhonghua Huang, Xuyan Shi, Aimin First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications |
title | First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications |
title_full | First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications |
title_fullStr | First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications |
title_full_unstemmed | First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications |
title_short | First mitochondrial genome of subfamily Julodinae (Coleoptera, Buprestidae) with its phylogenetic implications |
title_sort | first mitochondrial genome of subfamily julodinae (coleoptera, buprestidae) with its phylogenetic implications |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9860506/ https://www.ncbi.nlm.nih.gov/pubmed/36761279 http://dx.doi.org/10.3897/zookeys.1139.96216 |
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