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HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network

An accurate and efficient automatic brain tumor segmentation algorithm is important for clinical practice. In recent years, there has been much interest in automatic segmentation algorithms that use convolutional neural networks. In this paper, we propose a novel hierarchical multi-scale segmentatio...

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Autores principales: Zhang, Ruifeng, Jia, Shasha, Adamu, Mohammed Jajere, Nie, Weizhi, Li, Qiang, Wu, Ting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9861819/
https://www.ncbi.nlm.nih.gov/pubmed/36675470
http://dx.doi.org/10.3390/jcm12020538
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author Zhang, Ruifeng
Jia, Shasha
Adamu, Mohammed Jajere
Nie, Weizhi
Li, Qiang
Wu, Ting
author_facet Zhang, Ruifeng
Jia, Shasha
Adamu, Mohammed Jajere
Nie, Weizhi
Li, Qiang
Wu, Ting
author_sort Zhang, Ruifeng
collection PubMed
description An accurate and efficient automatic brain tumor segmentation algorithm is important for clinical practice. In recent years, there has been much interest in automatic segmentation algorithms that use convolutional neural networks. In this paper, we propose a novel hierarchical multi-scale segmentation network (HMNet), which contains a high-resolution branch and parallel multi-resolution branches. The high-resolution branch can keep track of the brain tumor’s spatial details, and the multi-resolution feature exchange and fusion allow the network’s receptive fields to adapt to brain tumors of different shapes and sizes. In particular, to overcome the large computational overhead caused by expensive 3D convolution, we propose a lightweight conditional channel weighting block to reduce GPU memory and improve the efficiency of HMNet. We also propose a lightweight multi-resolution feature fusion (LMRF) module to further reduce model complexity and reduce the redundancy of the feature maps. We run tests on the BraTS 2020 dataset to determine how well the proposed network would work. The dice similarity coefficients of HMNet for ET, WT, and TC are 0.781, 0.901, and 0.823, respectively. Many comparative experiments on the BraTS 2020 dataset and other two datasets show that our proposed HMNet has achieved satisfactory performance compared with the SOTA approaches.
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spelling pubmed-98618192023-01-22 HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network Zhang, Ruifeng Jia, Shasha Adamu, Mohammed Jajere Nie, Weizhi Li, Qiang Wu, Ting J Clin Med Article An accurate and efficient automatic brain tumor segmentation algorithm is important for clinical practice. In recent years, there has been much interest in automatic segmentation algorithms that use convolutional neural networks. In this paper, we propose a novel hierarchical multi-scale segmentation network (HMNet), which contains a high-resolution branch and parallel multi-resolution branches. The high-resolution branch can keep track of the brain tumor’s spatial details, and the multi-resolution feature exchange and fusion allow the network’s receptive fields to adapt to brain tumors of different shapes and sizes. In particular, to overcome the large computational overhead caused by expensive 3D convolution, we propose a lightweight conditional channel weighting block to reduce GPU memory and improve the efficiency of HMNet. We also propose a lightweight multi-resolution feature fusion (LMRF) module to further reduce model complexity and reduce the redundancy of the feature maps. We run tests on the BraTS 2020 dataset to determine how well the proposed network would work. The dice similarity coefficients of HMNet for ET, WT, and TC are 0.781, 0.901, and 0.823, respectively. Many comparative experiments on the BraTS 2020 dataset and other two datasets show that our proposed HMNet has achieved satisfactory performance compared with the SOTA approaches. MDPI 2023-01-09 /pmc/articles/PMC9861819/ /pubmed/36675470 http://dx.doi.org/10.3390/jcm12020538 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Ruifeng
Jia, Shasha
Adamu, Mohammed Jajere
Nie, Weizhi
Li, Qiang
Wu, Ting
HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network
title HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network
title_full HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network
title_fullStr HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network
title_full_unstemmed HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network
title_short HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network
title_sort hmnet: hierarchical multi-scale brain tumor segmentation network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9861819/
https://www.ncbi.nlm.nih.gov/pubmed/36675470
http://dx.doi.org/10.3390/jcm12020538
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