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Bacterial diversity in the aquatic system in India based on metagenome analysis—a critical review

Microbial analysis has become one of the most critical areas in aquatic ecology and a crucial component for assessing the contribution of microbes in food web dynamics and biogeochemical processes. Initial research was focused on estimating the abundance and distribution of the microbes using micros...

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Autores principales: Vijayan, Jasna, Nathan, Vinod Kumar, Ammini, Parvathi, Ammanamveetil, Abdulla Mohamed Hatha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9862233/
https://www.ncbi.nlm.nih.gov/pubmed/36680718
http://dx.doi.org/10.1007/s11356-023-25195-2
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author Vijayan, Jasna
Nathan, Vinod Kumar
Ammini, Parvathi
Ammanamveetil, Abdulla Mohamed Hatha
author_facet Vijayan, Jasna
Nathan, Vinod Kumar
Ammini, Parvathi
Ammanamveetil, Abdulla Mohamed Hatha
author_sort Vijayan, Jasna
collection PubMed
description Microbial analysis has become one of the most critical areas in aquatic ecology and a crucial component for assessing the contribution of microbes in food web dynamics and biogeochemical processes. Initial research was focused on estimating the abundance and distribution of the microbes using microscopy and culture-based analysis, which are undoubtedly complex tasks. Over the past few decades, microbiologists have endeavored to apply and extend molecular techniques to address pertinent questions related to the function and metabolism of microbes in aquatic ecology. Metagenomics analysis has revolutionized aquatic ecology studies involving the investigation of the genome of a mixed community of organisms in an ecosystem to identify microorganisms, their functionality, and the discovery of novel proteins. This review discusses the metagenomics analysis of bacterial diversity in and around different aquatic systems in India.
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spelling pubmed-98622332023-01-23 Bacterial diversity in the aquatic system in India based on metagenome analysis—a critical review Vijayan, Jasna Nathan, Vinod Kumar Ammini, Parvathi Ammanamveetil, Abdulla Mohamed Hatha Environ Sci Pollut Res Int Review Article Microbial analysis has become one of the most critical areas in aquatic ecology and a crucial component for assessing the contribution of microbes in food web dynamics and biogeochemical processes. Initial research was focused on estimating the abundance and distribution of the microbes using microscopy and culture-based analysis, which are undoubtedly complex tasks. Over the past few decades, microbiologists have endeavored to apply and extend molecular techniques to address pertinent questions related to the function and metabolism of microbes in aquatic ecology. Metagenomics analysis has revolutionized aquatic ecology studies involving the investigation of the genome of a mixed community of organisms in an ecosystem to identify microorganisms, their functionality, and the discovery of novel proteins. This review discusses the metagenomics analysis of bacterial diversity in and around different aquatic systems in India. Springer Berlin Heidelberg 2023-01-21 2023 /pmc/articles/PMC9862233/ /pubmed/36680718 http://dx.doi.org/10.1007/s11356-023-25195-2 Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Review Article
Vijayan, Jasna
Nathan, Vinod Kumar
Ammini, Parvathi
Ammanamveetil, Abdulla Mohamed Hatha
Bacterial diversity in the aquatic system in India based on metagenome analysis—a critical review
title Bacterial diversity in the aquatic system in India based on metagenome analysis—a critical review
title_full Bacterial diversity in the aquatic system in India based on metagenome analysis—a critical review
title_fullStr Bacterial diversity in the aquatic system in India based on metagenome analysis—a critical review
title_full_unstemmed Bacterial diversity in the aquatic system in India based on metagenome analysis—a critical review
title_short Bacterial diversity in the aquatic system in India based on metagenome analysis—a critical review
title_sort bacterial diversity in the aquatic system in india based on metagenome analysis—a critical review
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9862233/
https://www.ncbi.nlm.nih.gov/pubmed/36680718
http://dx.doi.org/10.1007/s11356-023-25195-2
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