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Optimization of Transposon Mutagenesis Methods in Pseudomonas antarctica

Pseudomonas is a widespread genus in various host and environmental niches. Pseudomonas exists even in extremely cold environments such as Antarctica. Pseudomonas antarctica is a psychrophilic bacterium isolated from Antarctica. P. antarctica is also known to produce antimicrobial substances. Althou...

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Detalles Bibliográficos
Autores principales: Kim, Sangha, Lee, Changhan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9864612/
https://www.ncbi.nlm.nih.gov/pubmed/36677410
http://dx.doi.org/10.3390/microorganisms11010118
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author Kim, Sangha
Lee, Changhan
author_facet Kim, Sangha
Lee, Changhan
author_sort Kim, Sangha
collection PubMed
description Pseudomonas is a widespread genus in various host and environmental niches. Pseudomonas exists even in extremely cold environments such as Antarctica. Pseudomonas antarctica is a psychrophilic bacterium isolated from Antarctica. P. antarctica is also known to produce antimicrobial substances. Although P. antarctica can provide insight into how bacteria have adapted to low temperatures and has significant potential for developing novel antimicrobial substances, progress in genetic and molecular studies has not been achieved. Transposon mutagenesis is a useful tool to screen genes of interest in bacteria. Therefore, we attempted for the first time in P. antarctica to generate transposon insertion mutants using the transfer of a conjugational plasmid encoding a transposon. To increase the yield of transposon insertion mutants, we optimized the methods, in terms of temperature for conjugation, the ratio of donor and recipient during conjugation, and the concentration of antibiotics. Here, we describe the optimized methods to successfully generate transposon insertion mutants in P. antarctica.
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spelling pubmed-98646122023-01-22 Optimization of Transposon Mutagenesis Methods in Pseudomonas antarctica Kim, Sangha Lee, Changhan Microorganisms Communication Pseudomonas is a widespread genus in various host and environmental niches. Pseudomonas exists even in extremely cold environments such as Antarctica. Pseudomonas antarctica is a psychrophilic bacterium isolated from Antarctica. P. antarctica is also known to produce antimicrobial substances. Although P. antarctica can provide insight into how bacteria have adapted to low temperatures and has significant potential for developing novel antimicrobial substances, progress in genetic and molecular studies has not been achieved. Transposon mutagenesis is a useful tool to screen genes of interest in bacteria. Therefore, we attempted for the first time in P. antarctica to generate transposon insertion mutants using the transfer of a conjugational plasmid encoding a transposon. To increase the yield of transposon insertion mutants, we optimized the methods, in terms of temperature for conjugation, the ratio of donor and recipient during conjugation, and the concentration of antibiotics. Here, we describe the optimized methods to successfully generate transposon insertion mutants in P. antarctica. MDPI 2023-01-01 /pmc/articles/PMC9864612/ /pubmed/36677410 http://dx.doi.org/10.3390/microorganisms11010118 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Communication
Kim, Sangha
Lee, Changhan
Optimization of Transposon Mutagenesis Methods in Pseudomonas antarctica
title Optimization of Transposon Mutagenesis Methods in Pseudomonas antarctica
title_full Optimization of Transposon Mutagenesis Methods in Pseudomonas antarctica
title_fullStr Optimization of Transposon Mutagenesis Methods in Pseudomonas antarctica
title_full_unstemmed Optimization of Transposon Mutagenesis Methods in Pseudomonas antarctica
title_short Optimization of Transposon Mutagenesis Methods in Pseudomonas antarctica
title_sort optimization of transposon mutagenesis methods in pseudomonas antarctica
topic Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9864612/
https://www.ncbi.nlm.nih.gov/pubmed/36677410
http://dx.doi.org/10.3390/microorganisms11010118
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