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Conformations of Steroid Hormones: Infrared and Vibrational Circular Dichroism Spectroscopy
Steroid hormone molecules may exhibit very different functionalities based on the associated functional groups and their 3D arrangements in space, i.e., absolute configurations and conformations. Infrared (IR) and vibrational circular dichroism (VCD) spectra of four different steroid hormones, namel...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9864676/ https://www.ncbi.nlm.nih.gov/pubmed/36677830 http://dx.doi.org/10.3390/molecules28020771 |
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author | Yang, Yanqing Krin, Anna Cai, Xiaoli Poopari, Mohammad Reza Zhang, Yuefei Cheeseman, James R. Xu, Yunjie |
author_facet | Yang, Yanqing Krin, Anna Cai, Xiaoli Poopari, Mohammad Reza Zhang, Yuefei Cheeseman, James R. Xu, Yunjie |
author_sort | Yang, Yanqing |
collection | PubMed |
description | Steroid hormone molecules may exhibit very different functionalities based on the associated functional groups and their 3D arrangements in space, i.e., absolute configurations and conformations. Infrared (IR) and vibrational circular dichroism (VCD) spectra of four different steroid hormones, namely dehydroepiandrosterone (DHEA), 17α-methyltestosterone (MTTT), (16α,17)-epoxyprogesterone (Epoxy-P4), and dehydroepiandrosterone acetate (AcO-DHEA), were measured in deuterated dimethyl sulfoxide and some also in carbon tetrachloride. Extensive conformational searches were carried out using the recent developed conformer-rotamer ensemble sampling tool (CREST) which also accounts for solvent effects using an implicit solvation model. All the CREST conformational candidates were then reoptimized at the B3LYP-D3BJ/def2-TZVPD with the PCM of solvent. The good agreements between the experimental IR and VCD spectra and the theoretical simulations provide a conclusive information about their conformational distribution and absolute configurations. The experimental and theoretical IR and VCD spectra of AcO-DHEA in the carbonyl and alkene stretching region showed some discrepancies, and the possible causes related to solvent effects, large amplitude motions and levels of theory used in the modelling were explored in detail. As part of the investigation, additional calculations at the B3LYP-D3BJ/6-31++G (2d,p) and B3LYP-D3BJ/cc-pVTZ levels, as well as some ‘mixed’ calculations with the double-hybrid functional B2PLYP-D3 were also carried out. The results indicate that the double-hybrid functional is important for predicting the correct IR band pattern in the carbonyl and alkene stretching region. |
format | Online Article Text |
id | pubmed-9864676 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-98646762023-01-22 Conformations of Steroid Hormones: Infrared and Vibrational Circular Dichroism Spectroscopy Yang, Yanqing Krin, Anna Cai, Xiaoli Poopari, Mohammad Reza Zhang, Yuefei Cheeseman, James R. Xu, Yunjie Molecules Article Steroid hormone molecules may exhibit very different functionalities based on the associated functional groups and their 3D arrangements in space, i.e., absolute configurations and conformations. Infrared (IR) and vibrational circular dichroism (VCD) spectra of four different steroid hormones, namely dehydroepiandrosterone (DHEA), 17α-methyltestosterone (MTTT), (16α,17)-epoxyprogesterone (Epoxy-P4), and dehydroepiandrosterone acetate (AcO-DHEA), were measured in deuterated dimethyl sulfoxide and some also in carbon tetrachloride. Extensive conformational searches were carried out using the recent developed conformer-rotamer ensemble sampling tool (CREST) which also accounts for solvent effects using an implicit solvation model. All the CREST conformational candidates were then reoptimized at the B3LYP-D3BJ/def2-TZVPD with the PCM of solvent. The good agreements between the experimental IR and VCD spectra and the theoretical simulations provide a conclusive information about their conformational distribution and absolute configurations. The experimental and theoretical IR and VCD spectra of AcO-DHEA in the carbonyl and alkene stretching region showed some discrepancies, and the possible causes related to solvent effects, large amplitude motions and levels of theory used in the modelling were explored in detail. As part of the investigation, additional calculations at the B3LYP-D3BJ/6-31++G (2d,p) and B3LYP-D3BJ/cc-pVTZ levels, as well as some ‘mixed’ calculations with the double-hybrid functional B2PLYP-D3 were also carried out. The results indicate that the double-hybrid functional is important for predicting the correct IR band pattern in the carbonyl and alkene stretching region. MDPI 2023-01-12 /pmc/articles/PMC9864676/ /pubmed/36677830 http://dx.doi.org/10.3390/molecules28020771 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Yang, Yanqing Krin, Anna Cai, Xiaoli Poopari, Mohammad Reza Zhang, Yuefei Cheeseman, James R. Xu, Yunjie Conformations of Steroid Hormones: Infrared and Vibrational Circular Dichroism Spectroscopy |
title | Conformations of Steroid Hormones: Infrared and Vibrational Circular Dichroism Spectroscopy |
title_full | Conformations of Steroid Hormones: Infrared and Vibrational Circular Dichroism Spectroscopy |
title_fullStr | Conformations of Steroid Hormones: Infrared and Vibrational Circular Dichroism Spectroscopy |
title_full_unstemmed | Conformations of Steroid Hormones: Infrared and Vibrational Circular Dichroism Spectroscopy |
title_short | Conformations of Steroid Hormones: Infrared and Vibrational Circular Dichroism Spectroscopy |
title_sort | conformations of steroid hormones: infrared and vibrational circular dichroism spectroscopy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9864676/ https://www.ncbi.nlm.nih.gov/pubmed/36677830 http://dx.doi.org/10.3390/molecules28020771 |
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