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Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR
Resolving small molecule mixtures by nuclear magnetic resonance (NMR) spectroscopy has been of great interest for a long time for its precision, reproducibility, and efficiency. However, spectral analyses for such mixtures are often highly challenging due to overlapping resonance lines and limited c...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9866129/ https://www.ncbi.nlm.nih.gov/pubmed/36677850 http://dx.doi.org/10.3390/molecules28020792 |
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author | Sinha Roy, Aritro Srivastava, Madhur |
author_facet | Sinha Roy, Aritro Srivastava, Madhur |
author_sort | Sinha Roy, Aritro |
collection | PubMed |
description | Resolving small molecule mixtures by nuclear magnetic resonance (NMR) spectroscopy has been of great interest for a long time for its precision, reproducibility, and efficiency. However, spectral analyses for such mixtures are often highly challenging due to overlapping resonance lines and limited chemical shift windows. The existing experimental and theoretical methods to produce shift NMR spectra in dealing with the problem have limited applicability owing to sensitivity issues, inconsistency, and/or the requirement of prior knowledge. Recently, we resolved the problem by decoupling multiplet structures in NMR spectra by the wavelet packet transform (WPT) technique. In this work, we developed a scheme for deploying the method in generating highly resolved WPT NMR spectra and predicting the composition of the corresponding molecular mixtures from their [Formula: see text] H NMR spectra in an automated fashion. The four-step spectral analysis scheme consists of calculating the WPT spectrum, peak matching with a WPT shift NMR library, followed by two optimization steps in producing the predicted molecular composition of a mixture. The robustness of the method was tested on an augmented dataset of 1000 molecular mixtures, each containing 3 to 7 molecules. The method successfully predicted the constituent molecules with a median true positive rate of 1.0 against the varying compositions, while a median false positive rate of 0.04 was obtained. The approach can be scaled easily for much larger datasets. |
format | Online Article Text |
id | pubmed-9866129 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-98661292023-01-22 Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR Sinha Roy, Aritro Srivastava, Madhur Molecules Article Resolving small molecule mixtures by nuclear magnetic resonance (NMR) spectroscopy has been of great interest for a long time for its precision, reproducibility, and efficiency. However, spectral analyses for such mixtures are often highly challenging due to overlapping resonance lines and limited chemical shift windows. The existing experimental and theoretical methods to produce shift NMR spectra in dealing with the problem have limited applicability owing to sensitivity issues, inconsistency, and/or the requirement of prior knowledge. Recently, we resolved the problem by decoupling multiplet structures in NMR spectra by the wavelet packet transform (WPT) technique. In this work, we developed a scheme for deploying the method in generating highly resolved WPT NMR spectra and predicting the composition of the corresponding molecular mixtures from their [Formula: see text] H NMR spectra in an automated fashion. The four-step spectral analysis scheme consists of calculating the WPT spectrum, peak matching with a WPT shift NMR library, followed by two optimization steps in producing the predicted molecular composition of a mixture. The robustness of the method was tested on an augmented dataset of 1000 molecular mixtures, each containing 3 to 7 molecules. The method successfully predicted the constituent molecules with a median true positive rate of 1.0 against the varying compositions, while a median false positive rate of 0.04 was obtained. The approach can be scaled easily for much larger datasets. MDPI 2023-01-13 /pmc/articles/PMC9866129/ /pubmed/36677850 http://dx.doi.org/10.3390/molecules28020792 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Sinha Roy, Aritro Srivastava, Madhur Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR |
title | Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR |
title_full | Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR |
title_fullStr | Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR |
title_full_unstemmed | Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR |
title_short | Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR |
title_sort | unsupervised analysis of small molecule mixtures by wavelet-based super-resolved nmr |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9866129/ https://www.ncbi.nlm.nih.gov/pubmed/36677850 http://dx.doi.org/10.3390/molecules28020792 |
work_keys_str_mv | AT sinharoyaritro unsupervisedanalysisofsmallmoleculemixturesbywaveletbasedsuperresolvednmr AT srivastavamadhur unsupervisedanalysisofsmallmoleculemixturesbywaveletbasedsuperresolvednmr |