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Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR

Resolving small molecule mixtures by nuclear magnetic resonance (NMR) spectroscopy has been of great interest for a long time for its precision, reproducibility, and efficiency. However, spectral analyses for such mixtures are often highly challenging due to overlapping resonance lines and limited c...

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Detalles Bibliográficos
Autores principales: Sinha Roy, Aritro, Srivastava, Madhur
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9866129/
https://www.ncbi.nlm.nih.gov/pubmed/36677850
http://dx.doi.org/10.3390/molecules28020792
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author Sinha Roy, Aritro
Srivastava, Madhur
author_facet Sinha Roy, Aritro
Srivastava, Madhur
author_sort Sinha Roy, Aritro
collection PubMed
description Resolving small molecule mixtures by nuclear magnetic resonance (NMR) spectroscopy has been of great interest for a long time for its precision, reproducibility, and efficiency. However, spectral analyses for such mixtures are often highly challenging due to overlapping resonance lines and limited chemical shift windows. The existing experimental and theoretical methods to produce shift NMR spectra in dealing with the problem have limited applicability owing to sensitivity issues, inconsistency, and/or the requirement of prior knowledge. Recently, we resolved the problem by decoupling multiplet structures in NMR spectra by the wavelet packet transform (WPT) technique. In this work, we developed a scheme for deploying the method in generating highly resolved WPT NMR spectra and predicting the composition of the corresponding molecular mixtures from their [Formula: see text] H NMR spectra in an automated fashion. The four-step spectral analysis scheme consists of calculating the WPT spectrum, peak matching with a WPT shift NMR library, followed by two optimization steps in producing the predicted molecular composition of a mixture. The robustness of the method was tested on an augmented dataset of 1000 molecular mixtures, each containing 3 to 7 molecules. The method successfully predicted the constituent molecules with a median true positive rate of 1.0 against the varying compositions, while a median false positive rate of 0.04 was obtained. The approach can be scaled easily for much larger datasets.
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spelling pubmed-98661292023-01-22 Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR Sinha Roy, Aritro Srivastava, Madhur Molecules Article Resolving small molecule mixtures by nuclear magnetic resonance (NMR) spectroscopy has been of great interest for a long time for its precision, reproducibility, and efficiency. However, spectral analyses for such mixtures are often highly challenging due to overlapping resonance lines and limited chemical shift windows. The existing experimental and theoretical methods to produce shift NMR spectra in dealing with the problem have limited applicability owing to sensitivity issues, inconsistency, and/or the requirement of prior knowledge. Recently, we resolved the problem by decoupling multiplet structures in NMR spectra by the wavelet packet transform (WPT) technique. In this work, we developed a scheme for deploying the method in generating highly resolved WPT NMR spectra and predicting the composition of the corresponding molecular mixtures from their [Formula: see text] H NMR spectra in an automated fashion. The four-step spectral analysis scheme consists of calculating the WPT spectrum, peak matching with a WPT shift NMR library, followed by two optimization steps in producing the predicted molecular composition of a mixture. The robustness of the method was tested on an augmented dataset of 1000 molecular mixtures, each containing 3 to 7 molecules. The method successfully predicted the constituent molecules with a median true positive rate of 1.0 against the varying compositions, while a median false positive rate of 0.04 was obtained. The approach can be scaled easily for much larger datasets. MDPI 2023-01-13 /pmc/articles/PMC9866129/ /pubmed/36677850 http://dx.doi.org/10.3390/molecules28020792 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Sinha Roy, Aritro
Srivastava, Madhur
Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR
title Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR
title_full Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR
title_fullStr Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR
title_full_unstemmed Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR
title_short Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR
title_sort unsupervised analysis of small molecule mixtures by wavelet-based super-resolved nmr
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9866129/
https://www.ncbi.nlm.nih.gov/pubmed/36677850
http://dx.doi.org/10.3390/molecules28020792
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