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The Role of Flavobacterium enshiense R6S-5-6 in the Wetland Ecosystem Revealed by Whole-Genome Analysis

The wetland is an important ecosystem for purifying pollutants and circulating nutrients. Numerous microorganisms contribute to maintaining this function. We obtained Flavobacterium enshiense R6S-5-6 which was isolated from Ungok (Ramsar) Wetland and conducted whole-genome sequencing to investigate...

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Autores principales: Choi, Ahhyeon, Cha, In-Tae, Lee, Ki-Eun, Son, Youn Kyoung, Yu, Jaewoong, Seol, Donghyeok
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9867689/
https://www.ncbi.nlm.nih.gov/pubmed/36680647
http://dx.doi.org/10.1007/s00284-022-03157-0
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author Choi, Ahhyeon
Cha, In-Tae
Lee, Ki-Eun
Son, Youn Kyoung
Yu, Jaewoong
Seol, Donghyeok
author_facet Choi, Ahhyeon
Cha, In-Tae
Lee, Ki-Eun
Son, Youn Kyoung
Yu, Jaewoong
Seol, Donghyeok
author_sort Choi, Ahhyeon
collection PubMed
description The wetland is an important ecosystem for purifying pollutants and circulating nutrients. Numerous microorganisms contribute to maintaining this function. We obtained Flavobacterium enshiense R6S-5-6 which was isolated from Ungok (Ramsar) Wetland and conducted whole-genome sequencing to investigate what contribution R6S-5-6 could make to the wetland community. The complete genome sequence of R6S-5-6 has a size of 3,251,289 bp with 37.68% of GC content. Gene annotation revealed that R6S-5-6 has several pathways to break down pollutants, including denitrification, assimilatory sulfate reduction (ASR), and polyphosphate-accumulating process. Furthermore, R6S-5-6 has genes that can have a positive effect on plants living in wetlands, such as storing essential nutrients, promoting plant growth, and protecting plants against pathogens. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00284-022-03157-0.
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spelling pubmed-98676892023-01-23 The Role of Flavobacterium enshiense R6S-5-6 in the Wetland Ecosystem Revealed by Whole-Genome Analysis Choi, Ahhyeon Cha, In-Tae Lee, Ki-Eun Son, Youn Kyoung Yu, Jaewoong Seol, Donghyeok Curr Microbiol Article The wetland is an important ecosystem for purifying pollutants and circulating nutrients. Numerous microorganisms contribute to maintaining this function. We obtained Flavobacterium enshiense R6S-5-6 which was isolated from Ungok (Ramsar) Wetland and conducted whole-genome sequencing to investigate what contribution R6S-5-6 could make to the wetland community. The complete genome sequence of R6S-5-6 has a size of 3,251,289 bp with 37.68% of GC content. Gene annotation revealed that R6S-5-6 has several pathways to break down pollutants, including denitrification, assimilatory sulfate reduction (ASR), and polyphosphate-accumulating process. Furthermore, R6S-5-6 has genes that can have a positive effect on plants living in wetlands, such as storing essential nutrients, promoting plant growth, and protecting plants against pathogens. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00284-022-03157-0. Springer US 2023-01-21 2023 /pmc/articles/PMC9867689/ /pubmed/36680647 http://dx.doi.org/10.1007/s00284-022-03157-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Choi, Ahhyeon
Cha, In-Tae
Lee, Ki-Eun
Son, Youn Kyoung
Yu, Jaewoong
Seol, Donghyeok
The Role of Flavobacterium enshiense R6S-5-6 in the Wetland Ecosystem Revealed by Whole-Genome Analysis
title The Role of Flavobacterium enshiense R6S-5-6 in the Wetland Ecosystem Revealed by Whole-Genome Analysis
title_full The Role of Flavobacterium enshiense R6S-5-6 in the Wetland Ecosystem Revealed by Whole-Genome Analysis
title_fullStr The Role of Flavobacterium enshiense R6S-5-6 in the Wetland Ecosystem Revealed by Whole-Genome Analysis
title_full_unstemmed The Role of Flavobacterium enshiense R6S-5-6 in the Wetland Ecosystem Revealed by Whole-Genome Analysis
title_short The Role of Flavobacterium enshiense R6S-5-6 in the Wetland Ecosystem Revealed by Whole-Genome Analysis
title_sort role of flavobacterium enshiense r6s-5-6 in the wetland ecosystem revealed by whole-genome analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9867689/
https://www.ncbi.nlm.nih.gov/pubmed/36680647
http://dx.doi.org/10.1007/s00284-022-03157-0
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