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Evaluation of emphysema on thoracic low-dose CTs through attention-based multiple instance deep learning

In addition to lung cancer, other thoracic abnormalities, such as emphysema, can be visualized within low-dose CT scans that were initially obtained in cancer screening programs, and thus, opportunistic evaluation of these diseases may be highly valuable. However, manual assessment for each scan is...

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Autores principales: Fuhrman, Jordan, Yip, Rowena, Zhu, Yeqing, Jirapatnakul, Artit C., Li, Feng, Henschke, Claudia I., Yankelevitz, David F., Giger, Maryellen L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9867724/
https://www.ncbi.nlm.nih.gov/pubmed/36681685
http://dx.doi.org/10.1038/s41598-023-27549-9
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author Fuhrman, Jordan
Yip, Rowena
Zhu, Yeqing
Jirapatnakul, Artit C.
Li, Feng
Henschke, Claudia I.
Yankelevitz, David F.
Giger, Maryellen L.
author_facet Fuhrman, Jordan
Yip, Rowena
Zhu, Yeqing
Jirapatnakul, Artit C.
Li, Feng
Henschke, Claudia I.
Yankelevitz, David F.
Giger, Maryellen L.
author_sort Fuhrman, Jordan
collection PubMed
description In addition to lung cancer, other thoracic abnormalities, such as emphysema, can be visualized within low-dose CT scans that were initially obtained in cancer screening programs, and thus, opportunistic evaluation of these diseases may be highly valuable. However, manual assessment for each scan is tedious and often subjective, thus we have developed an automatic, rapid computer-aided diagnosis system for emphysema using attention-based multiple instance deep learning and 865 LDCTs. In the task of determining if a CT scan presented with emphysema or not, our novel Transfer AMIL approach yielded an area under the ROC curve of 0.94 ± 0.04, which was a statistically significant improvement compared to other methods evaluated in our study following the Delong Test with correction for multiple comparisons. Further, from our novel attention weight curves, we found that the upper lung demonstrated a stronger influence in all scan classes, indicating that the model prioritized upper lobe information. Overall, our novel Transfer AMIL method yielded high performance and provided interpretable information by identifying slices that were most influential to the classification decision, thus demonstrating strong potential for clinical implementation.
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spelling pubmed-98677242023-01-23 Evaluation of emphysema on thoracic low-dose CTs through attention-based multiple instance deep learning Fuhrman, Jordan Yip, Rowena Zhu, Yeqing Jirapatnakul, Artit C. Li, Feng Henschke, Claudia I. Yankelevitz, David F. Giger, Maryellen L. Sci Rep Article In addition to lung cancer, other thoracic abnormalities, such as emphysema, can be visualized within low-dose CT scans that were initially obtained in cancer screening programs, and thus, opportunistic evaluation of these diseases may be highly valuable. However, manual assessment for each scan is tedious and often subjective, thus we have developed an automatic, rapid computer-aided diagnosis system for emphysema using attention-based multiple instance deep learning and 865 LDCTs. In the task of determining if a CT scan presented with emphysema or not, our novel Transfer AMIL approach yielded an area under the ROC curve of 0.94 ± 0.04, which was a statistically significant improvement compared to other methods evaluated in our study following the Delong Test with correction for multiple comparisons. Further, from our novel attention weight curves, we found that the upper lung demonstrated a stronger influence in all scan classes, indicating that the model prioritized upper lobe information. Overall, our novel Transfer AMIL method yielded high performance and provided interpretable information by identifying slices that were most influential to the classification decision, thus demonstrating strong potential for clinical implementation. Nature Publishing Group UK 2023-01-21 /pmc/articles/PMC9867724/ /pubmed/36681685 http://dx.doi.org/10.1038/s41598-023-27549-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Fuhrman, Jordan
Yip, Rowena
Zhu, Yeqing
Jirapatnakul, Artit C.
Li, Feng
Henschke, Claudia I.
Yankelevitz, David F.
Giger, Maryellen L.
Evaluation of emphysema on thoracic low-dose CTs through attention-based multiple instance deep learning
title Evaluation of emphysema on thoracic low-dose CTs through attention-based multiple instance deep learning
title_full Evaluation of emphysema on thoracic low-dose CTs through attention-based multiple instance deep learning
title_fullStr Evaluation of emphysema on thoracic low-dose CTs through attention-based multiple instance deep learning
title_full_unstemmed Evaluation of emphysema on thoracic low-dose CTs through attention-based multiple instance deep learning
title_short Evaluation of emphysema on thoracic low-dose CTs through attention-based multiple instance deep learning
title_sort evaluation of emphysema on thoracic low-dose cts through attention-based multiple instance deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9867724/
https://www.ncbi.nlm.nih.gov/pubmed/36681685
http://dx.doi.org/10.1038/s41598-023-27549-9
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