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Dual encoder–decoder-based deep polyp segmentation network for colonoscopy images

Detection of colorectal polyps through colonoscopy is an essential practice in prevention of colorectal cancers. However, the method itself is labor intensive and is subject to human error. With the advent of deep learning-based methodologies, and specifically convolutional neural networks, an oppor...

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Autores principales: Lewis, John, Cha, Young-Jin, Kim, Jongho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9867760/
https://www.ncbi.nlm.nih.gov/pubmed/36681776
http://dx.doi.org/10.1038/s41598-023-28530-2
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author Lewis, John
Cha, Young-Jin
Kim, Jongho
author_facet Lewis, John
Cha, Young-Jin
Kim, Jongho
author_sort Lewis, John
collection PubMed
description Detection of colorectal polyps through colonoscopy is an essential practice in prevention of colorectal cancers. However, the method itself is labor intensive and is subject to human error. With the advent of deep learning-based methodologies, and specifically convolutional neural networks, an opportunity to improve upon the prognosis of potential patients suffering with colorectal cancer has appeared with automated detection and segmentation of polyps. Polyp segmentation is subject to a number of problems such as model overfitting and generalization, poor definition of boundary pixels, as well as the model’s ability to capture the practical range in textures, sizes, and colors. In an effort to address these challenges, we propose a dual encoder–decoder solution named Polyp Segmentation Network (PSNet). Both the dual encoder and decoder were developed by the comprehensive combination of a variety of deep learning modules, including the PS encoder, transformer encoder, PS decoder, enhanced dilated transformer decoder, partial decoder, and merge module. PSNet outperforms state-of-the-art results through an extensive comparative study against 5 existing polyp datasets with respect to both mDice and mIoU at 0.863 and 0.797, respectively. With our new modified polyp dataset we obtain an mDice and mIoU of 0.941 and 0.897 respectively.
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spelling pubmed-98677602023-01-23 Dual encoder–decoder-based deep polyp segmentation network for colonoscopy images Lewis, John Cha, Young-Jin Kim, Jongho Sci Rep Article Detection of colorectal polyps through colonoscopy is an essential practice in prevention of colorectal cancers. However, the method itself is labor intensive and is subject to human error. With the advent of deep learning-based methodologies, and specifically convolutional neural networks, an opportunity to improve upon the prognosis of potential patients suffering with colorectal cancer has appeared with automated detection and segmentation of polyps. Polyp segmentation is subject to a number of problems such as model overfitting and generalization, poor definition of boundary pixels, as well as the model’s ability to capture the practical range in textures, sizes, and colors. In an effort to address these challenges, we propose a dual encoder–decoder solution named Polyp Segmentation Network (PSNet). Both the dual encoder and decoder were developed by the comprehensive combination of a variety of deep learning modules, including the PS encoder, transformer encoder, PS decoder, enhanced dilated transformer decoder, partial decoder, and merge module. PSNet outperforms state-of-the-art results through an extensive comparative study against 5 existing polyp datasets with respect to both mDice and mIoU at 0.863 and 0.797, respectively. With our new modified polyp dataset we obtain an mDice and mIoU of 0.941 and 0.897 respectively. Nature Publishing Group UK 2023-01-21 /pmc/articles/PMC9867760/ /pubmed/36681776 http://dx.doi.org/10.1038/s41598-023-28530-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lewis, John
Cha, Young-Jin
Kim, Jongho
Dual encoder–decoder-based deep polyp segmentation network for colonoscopy images
title Dual encoder–decoder-based deep polyp segmentation network for colonoscopy images
title_full Dual encoder–decoder-based deep polyp segmentation network for colonoscopy images
title_fullStr Dual encoder–decoder-based deep polyp segmentation network for colonoscopy images
title_full_unstemmed Dual encoder–decoder-based deep polyp segmentation network for colonoscopy images
title_short Dual encoder–decoder-based deep polyp segmentation network for colonoscopy images
title_sort dual encoder–decoder-based deep polyp segmentation network for colonoscopy images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9867760/
https://www.ncbi.nlm.nih.gov/pubmed/36681776
http://dx.doi.org/10.1038/s41598-023-28530-2
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