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Identification of therapeutic targets and prognostic biomarkers among frizzled family genes in glioma

Background: The biological functions of the Frizzled gene family (FZDs), as the key node of wingless-type MMTV integration site family (Wnt) and mammalian target of rapamycin signaling pathways, have not been fully elucidated in glioma. This study aims to identify novel therapeutic targets and progn...

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Autores principales: Huang, Ke, Xu, Huimei, Han, Liang, Xu, Ruiming, Xu, Zhaoqing, Xie, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9868451/
https://www.ncbi.nlm.nih.gov/pubmed/36699699
http://dx.doi.org/10.3389/fmolb.2022.1054614
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author Huang, Ke
Xu, Huimei
Han, Liang
Xu, Ruiming
Xu, Zhaoqing
Xie, Yi
author_facet Huang, Ke
Xu, Huimei
Han, Liang
Xu, Ruiming
Xu, Zhaoqing
Xie, Yi
author_sort Huang, Ke
collection PubMed
description Background: The biological functions of the Frizzled gene family (FZDs), as the key node of wingless-type MMTV integration site family (Wnt) and mammalian target of rapamycin signaling pathways, have not been fully elucidated in glioma. This study aims to identify novel therapeutic targets and prognostic biomarkers for gliomas, which may help us understand the role of FZDs. Methods: RNA-sequence data were downloaded from The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) projects. Survival analyses, Cox regression analyses, nomograms, calibration curves, receiver operating characteristic (ROC) curves, gene function enrichment analyses, and immune cell infiltration analyses were conducted using R. Results: High expressions of FZDs were positively associated with the activation of mTOR signaling. FZD1/2/3/4/5/7/8 was significantly highly expressed in tumor tissues, and the high expression of FZD1/2/5/6/7/8 was significantly positively associated with poorer prognosis. FZD2 and FZD6 positively served as independent predictors of poor prognosis. Gene function analysis showed that FZDs were associated with mTOR signaling, immune response, cytokine-cytokine receptor interaction, extracellular matrix organization, apoptosis, and p53 signaling pathway. Conclusions: Our finding strongly indicated a crucial role of FZDs in glioma. FZD1/2/5/6/7/8 could be an unfavorable prognostic factor in glioma and FZD2 and FZD6 may be novel independent predictors of poor prognosis in glioma.
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spelling pubmed-98684512023-01-24 Identification of therapeutic targets and prognostic biomarkers among frizzled family genes in glioma Huang, Ke Xu, Huimei Han, Liang Xu, Ruiming Xu, Zhaoqing Xie, Yi Front Mol Biosci Molecular Biosciences Background: The biological functions of the Frizzled gene family (FZDs), as the key node of wingless-type MMTV integration site family (Wnt) and mammalian target of rapamycin signaling pathways, have not been fully elucidated in glioma. This study aims to identify novel therapeutic targets and prognostic biomarkers for gliomas, which may help us understand the role of FZDs. Methods: RNA-sequence data were downloaded from The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) projects. Survival analyses, Cox regression analyses, nomograms, calibration curves, receiver operating characteristic (ROC) curves, gene function enrichment analyses, and immune cell infiltration analyses were conducted using R. Results: High expressions of FZDs were positively associated with the activation of mTOR signaling. FZD1/2/3/4/5/7/8 was significantly highly expressed in tumor tissues, and the high expression of FZD1/2/5/6/7/8 was significantly positively associated with poorer prognosis. FZD2 and FZD6 positively served as independent predictors of poor prognosis. Gene function analysis showed that FZDs were associated with mTOR signaling, immune response, cytokine-cytokine receptor interaction, extracellular matrix organization, apoptosis, and p53 signaling pathway. Conclusions: Our finding strongly indicated a crucial role of FZDs in glioma. FZD1/2/5/6/7/8 could be an unfavorable prognostic factor in glioma and FZD2 and FZD6 may be novel independent predictors of poor prognosis in glioma. Frontiers Media S.A. 2023-01-09 /pmc/articles/PMC9868451/ /pubmed/36699699 http://dx.doi.org/10.3389/fmolb.2022.1054614 Text en Copyright © 2023 Huang, Xu, Han, Xu, Xu and Xie. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Huang, Ke
Xu, Huimei
Han, Liang
Xu, Ruiming
Xu, Zhaoqing
Xie, Yi
Identification of therapeutic targets and prognostic biomarkers among frizzled family genes in glioma
title Identification of therapeutic targets and prognostic biomarkers among frizzled family genes in glioma
title_full Identification of therapeutic targets and prognostic biomarkers among frizzled family genes in glioma
title_fullStr Identification of therapeutic targets and prognostic biomarkers among frizzled family genes in glioma
title_full_unstemmed Identification of therapeutic targets and prognostic biomarkers among frizzled family genes in glioma
title_short Identification of therapeutic targets and prognostic biomarkers among frizzled family genes in glioma
title_sort identification of therapeutic targets and prognostic biomarkers among frizzled family genes in glioma
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9868451/
https://www.ncbi.nlm.nih.gov/pubmed/36699699
http://dx.doi.org/10.3389/fmolb.2022.1054614
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