Cargando…
Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450
Ferredoxins are small iron–sulfur proteins and key players in essential metabolic pathways. Among all types, 3Fe–4S ferredoxins are less studied mostly due to anaerobic requirements. Their complexes with cytochrome P450 redox partners have not been structurally characterized. In the present work, we...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9868604/ https://www.ncbi.nlm.nih.gov/pubmed/36699703 http://dx.doi.org/10.3389/fmolb.2022.1100032 |
_version_ | 1784876576242925568 |
---|---|
author | Gilep, Andrei Varaksa, Tatsiana Bukhdruker, Sergey Kavaleuski, Anton Ryzhykau, Yury Smolskaya, Sviatlana Sushko, Tatsiana Tsumoto, Kouhei Grabovec, Irina Kapranov, Ivan Okhrimenko, Ivan Marin, Egor Shevtsov, Mikhail Mishin, Alexey Kovalev, Kirill Kuklin, Alexander Gordeliy, Valentin Kaluzhskiy, Leonid Gnedenko, Oksana Yablokov, Evgeniy Ivanov, Alexis Borshchevskiy, Valentin Strushkevich, Natallia |
author_facet | Gilep, Andrei Varaksa, Tatsiana Bukhdruker, Sergey Kavaleuski, Anton Ryzhykau, Yury Smolskaya, Sviatlana Sushko, Tatsiana Tsumoto, Kouhei Grabovec, Irina Kapranov, Ivan Okhrimenko, Ivan Marin, Egor Shevtsov, Mikhail Mishin, Alexey Kovalev, Kirill Kuklin, Alexander Gordeliy, Valentin Kaluzhskiy, Leonid Gnedenko, Oksana Yablokov, Evgeniy Ivanov, Alexis Borshchevskiy, Valentin Strushkevich, Natallia |
author_sort | Gilep, Andrei |
collection | PubMed |
description | Ferredoxins are small iron–sulfur proteins and key players in essential metabolic pathways. Among all types, 3Fe–4S ferredoxins are less studied mostly due to anaerobic requirements. Their complexes with cytochrome P450 redox partners have not been structurally characterized. In the present work, we solved the structures of both 3Fe–4S ferredoxins from M. tuberculosis—Fdx alone and the fusion FdxE–CYP143. Our SPR analysis demonstrated a high-affinity binding of FdxE to CYP143. According to SAXS data, the same complex is present in solution. The structure reveals extended multipoint interactions and the shape/charge complementarity of redox partners. Furthermore, FdxE binding induced conformational changes in CYP143 as evident from the solved CYP143 structure alone. The comparison of FdxE–CYP143 and modeled Fdx–CYP51 complexes further revealed the specificity of ferredoxins. Our results illuminate the diversity of electron transfer complexes for the production of different secondary metabolites. |
format | Online Article Text |
id | pubmed-9868604 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98686042023-01-24 Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450 Gilep, Andrei Varaksa, Tatsiana Bukhdruker, Sergey Kavaleuski, Anton Ryzhykau, Yury Smolskaya, Sviatlana Sushko, Tatsiana Tsumoto, Kouhei Grabovec, Irina Kapranov, Ivan Okhrimenko, Ivan Marin, Egor Shevtsov, Mikhail Mishin, Alexey Kovalev, Kirill Kuklin, Alexander Gordeliy, Valentin Kaluzhskiy, Leonid Gnedenko, Oksana Yablokov, Evgeniy Ivanov, Alexis Borshchevskiy, Valentin Strushkevich, Natallia Front Mol Biosci Molecular Biosciences Ferredoxins are small iron–sulfur proteins and key players in essential metabolic pathways. Among all types, 3Fe–4S ferredoxins are less studied mostly due to anaerobic requirements. Their complexes with cytochrome P450 redox partners have not been structurally characterized. In the present work, we solved the structures of both 3Fe–4S ferredoxins from M. tuberculosis—Fdx alone and the fusion FdxE–CYP143. Our SPR analysis demonstrated a high-affinity binding of FdxE to CYP143. According to SAXS data, the same complex is present in solution. The structure reveals extended multipoint interactions and the shape/charge complementarity of redox partners. Furthermore, FdxE binding induced conformational changes in CYP143 as evident from the solved CYP143 structure alone. The comparison of FdxE–CYP143 and modeled Fdx–CYP51 complexes further revealed the specificity of ferredoxins. Our results illuminate the diversity of electron transfer complexes for the production of different secondary metabolites. Frontiers Media S.A. 2023-01-09 /pmc/articles/PMC9868604/ /pubmed/36699703 http://dx.doi.org/10.3389/fmolb.2022.1100032 Text en Copyright © 2023 Gilep, Varaksa, Bukhdruker, Kavaleuski, Ryzhykau, Smolskaya, Sushko, Tsumoto, Grabovec, Kapranov, Okhrimenko, Marin, Shevtsov, Mishin, Kovalev, Kuklin, Gordeliy, Kaluzhskiy, Gnedenko, Yablokov, Ivanov, Borshchevskiy and Strushkevich. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Gilep, Andrei Varaksa, Tatsiana Bukhdruker, Sergey Kavaleuski, Anton Ryzhykau, Yury Smolskaya, Sviatlana Sushko, Tatsiana Tsumoto, Kouhei Grabovec, Irina Kapranov, Ivan Okhrimenko, Ivan Marin, Egor Shevtsov, Mikhail Mishin, Alexey Kovalev, Kirill Kuklin, Alexander Gordeliy, Valentin Kaluzhskiy, Leonid Gnedenko, Oksana Yablokov, Evgeniy Ivanov, Alexis Borshchevskiy, Valentin Strushkevich, Natallia Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450 |
title | Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450 |
title_full | Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450 |
title_fullStr | Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450 |
title_full_unstemmed | Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450 |
title_short | Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450 |
title_sort | structural insights into 3fe–4s ferredoxins diversity in m. tuberculosis highlighted by a first redox complex with p450 |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9868604/ https://www.ncbi.nlm.nih.gov/pubmed/36699703 http://dx.doi.org/10.3389/fmolb.2022.1100032 |
work_keys_str_mv | AT gilepandrei structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT varaksatatsiana structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT bukhdrukersergey structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT kavaleuskianton structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT ryzhykauyury structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT smolskayasviatlana structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT sushkotatsiana structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT tsumotokouhei structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT grabovecirina structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT kapranovivan structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT okhrimenkoivan structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT marinegor structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT shevtsovmikhail structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT mishinalexey structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT kovalevkirill structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT kuklinalexander structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT gordeliyvalentin structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT kaluzhskiyleonid structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT gnedenkooksana structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT yablokovevgeniy structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT ivanovalexis structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT borshchevskiyvalentin structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 AT strushkevichnatallia structuralinsightsinto3fe4sferredoxinsdiversityinmtuberculosishighlightedbyafirstredoxcomplexwithp450 |