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Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450

Ferredoxins are small iron–sulfur proteins and key players in essential metabolic pathways. Among all types, 3Fe–4S ferredoxins are less studied mostly due to anaerobic requirements. Their complexes with cytochrome P450 redox partners have not been structurally characterized. In the present work, we...

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Autores principales: Gilep, Andrei, Varaksa, Tatsiana, Bukhdruker, Sergey, Kavaleuski, Anton, Ryzhykau, Yury, Smolskaya, Sviatlana, Sushko, Tatsiana, Tsumoto, Kouhei, Grabovec, Irina, Kapranov, Ivan, Okhrimenko, Ivan, Marin, Egor, Shevtsov, Mikhail, Mishin, Alexey, Kovalev, Kirill, Kuklin, Alexander, Gordeliy, Valentin, Kaluzhskiy, Leonid, Gnedenko, Oksana, Yablokov, Evgeniy, Ivanov, Alexis, Borshchevskiy, Valentin, Strushkevich, Natallia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9868604/
https://www.ncbi.nlm.nih.gov/pubmed/36699703
http://dx.doi.org/10.3389/fmolb.2022.1100032
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author Gilep, Andrei
Varaksa, Tatsiana
Bukhdruker, Sergey
Kavaleuski, Anton
Ryzhykau, Yury
Smolskaya, Sviatlana
Sushko, Tatsiana
Tsumoto, Kouhei
Grabovec, Irina
Kapranov, Ivan
Okhrimenko, Ivan
Marin, Egor
Shevtsov, Mikhail
Mishin, Alexey
Kovalev, Kirill
Kuklin, Alexander
Gordeliy, Valentin
Kaluzhskiy, Leonid
Gnedenko, Oksana
Yablokov, Evgeniy
Ivanov, Alexis
Borshchevskiy, Valentin
Strushkevich, Natallia
author_facet Gilep, Andrei
Varaksa, Tatsiana
Bukhdruker, Sergey
Kavaleuski, Anton
Ryzhykau, Yury
Smolskaya, Sviatlana
Sushko, Tatsiana
Tsumoto, Kouhei
Grabovec, Irina
Kapranov, Ivan
Okhrimenko, Ivan
Marin, Egor
Shevtsov, Mikhail
Mishin, Alexey
Kovalev, Kirill
Kuklin, Alexander
Gordeliy, Valentin
Kaluzhskiy, Leonid
Gnedenko, Oksana
Yablokov, Evgeniy
Ivanov, Alexis
Borshchevskiy, Valentin
Strushkevich, Natallia
author_sort Gilep, Andrei
collection PubMed
description Ferredoxins are small iron–sulfur proteins and key players in essential metabolic pathways. Among all types, 3Fe–4S ferredoxins are less studied mostly due to anaerobic requirements. Their complexes with cytochrome P450 redox partners have not been structurally characterized. In the present work, we solved the structures of both 3Fe–4S ferredoxins from M. tuberculosis—Fdx alone and the fusion FdxE–CYP143. Our SPR analysis demonstrated a high-affinity binding of FdxE to CYP143. According to SAXS data, the same complex is present in solution. The structure reveals extended multipoint interactions and the shape/charge complementarity of redox partners. Furthermore, FdxE binding induced conformational changes in CYP143 as evident from the solved CYP143 structure alone. The comparison of FdxE–CYP143 and modeled Fdx–CYP51 complexes further revealed the specificity of ferredoxins. Our results illuminate the diversity of electron transfer complexes for the production of different secondary metabolites.
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spelling pubmed-98686042023-01-24 Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450 Gilep, Andrei Varaksa, Tatsiana Bukhdruker, Sergey Kavaleuski, Anton Ryzhykau, Yury Smolskaya, Sviatlana Sushko, Tatsiana Tsumoto, Kouhei Grabovec, Irina Kapranov, Ivan Okhrimenko, Ivan Marin, Egor Shevtsov, Mikhail Mishin, Alexey Kovalev, Kirill Kuklin, Alexander Gordeliy, Valentin Kaluzhskiy, Leonid Gnedenko, Oksana Yablokov, Evgeniy Ivanov, Alexis Borshchevskiy, Valentin Strushkevich, Natallia Front Mol Biosci Molecular Biosciences Ferredoxins are small iron–sulfur proteins and key players in essential metabolic pathways. Among all types, 3Fe–4S ferredoxins are less studied mostly due to anaerobic requirements. Their complexes with cytochrome P450 redox partners have not been structurally characterized. In the present work, we solved the structures of both 3Fe–4S ferredoxins from M. tuberculosis—Fdx alone and the fusion FdxE–CYP143. Our SPR analysis demonstrated a high-affinity binding of FdxE to CYP143. According to SAXS data, the same complex is present in solution. The structure reveals extended multipoint interactions and the shape/charge complementarity of redox partners. Furthermore, FdxE binding induced conformational changes in CYP143 as evident from the solved CYP143 structure alone. The comparison of FdxE–CYP143 and modeled Fdx–CYP51 complexes further revealed the specificity of ferredoxins. Our results illuminate the diversity of electron transfer complexes for the production of different secondary metabolites. Frontiers Media S.A. 2023-01-09 /pmc/articles/PMC9868604/ /pubmed/36699703 http://dx.doi.org/10.3389/fmolb.2022.1100032 Text en Copyright © 2023 Gilep, Varaksa, Bukhdruker, Kavaleuski, Ryzhykau, Smolskaya, Sushko, Tsumoto, Grabovec, Kapranov, Okhrimenko, Marin, Shevtsov, Mishin, Kovalev, Kuklin, Gordeliy, Kaluzhskiy, Gnedenko, Yablokov, Ivanov, Borshchevskiy and Strushkevich. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Gilep, Andrei
Varaksa, Tatsiana
Bukhdruker, Sergey
Kavaleuski, Anton
Ryzhykau, Yury
Smolskaya, Sviatlana
Sushko, Tatsiana
Tsumoto, Kouhei
Grabovec, Irina
Kapranov, Ivan
Okhrimenko, Ivan
Marin, Egor
Shevtsov, Mikhail
Mishin, Alexey
Kovalev, Kirill
Kuklin, Alexander
Gordeliy, Valentin
Kaluzhskiy, Leonid
Gnedenko, Oksana
Yablokov, Evgeniy
Ivanov, Alexis
Borshchevskiy, Valentin
Strushkevich, Natallia
Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450
title Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450
title_full Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450
title_fullStr Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450
title_full_unstemmed Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450
title_short Structural insights into 3Fe–4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450
title_sort structural insights into 3fe–4s ferredoxins diversity in m. tuberculosis highlighted by a first redox complex with p450
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9868604/
https://www.ncbi.nlm.nih.gov/pubmed/36699703
http://dx.doi.org/10.3389/fmolb.2022.1100032
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