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Characterization of a lactate metabolism-related signature for evaluation of immune features and prediction prognosis in glioma
BACKGROUND: Glioma is one of the most typical tumors in the central nervous system with a poor prognosis, and the optimal management strategy remains controversial. Lactate in the tumor microenvironment is known to promote cancer progression, but its impact on clinical outcomes of glioma is largely...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9868722/ https://www.ncbi.nlm.nih.gov/pubmed/36698888 http://dx.doi.org/10.3389/fneur.2022.1064349 |
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author | Wu, Zhiqiang Wang, Jing Li, Yanan Liu, Jianmin Kang, Zijian Yan, Wangjun |
author_facet | Wu, Zhiqiang Wang, Jing Li, Yanan Liu, Jianmin Kang, Zijian Yan, Wangjun |
author_sort | Wu, Zhiqiang |
collection | PubMed |
description | BACKGROUND: Glioma is one of the most typical tumors in the central nervous system with a poor prognosis, and the optimal management strategy remains controversial. Lactate in the tumor microenvironment is known to promote cancer progression, but its impact on clinical outcomes of glioma is largely unknown. METHODS: Glioma RNA-seq data were obtained from TCGA and GCGA databases. Lactate metabolism genes (LMGs) were then evaluated to construct an LMG model in glioma using Cox and LASSO regression. Immune cell infiltration, immune checkpoint gene expression, enriched pathways, genetic alteration, and drug sensitivity were compared within the risk subgroups. Based on the risk score and clinicopathological features, a nomogram was developed to predict prognosis in patients with glioma. RESULTS: Five genes (LDHA, LDHB, MRS2, SL16A1, and SL25A12) showed a good prognostic value and were used to construct an LMG-based risk score. This risk score was shown as an independent prognostic factor with good predictive power in both training and validation cohorts (p < 0.001). The LMG signature was found to be correlated with the expression of immune checkpoint genes and immune infiltration and could shape the tumor microenvironment. Genetic alteration, dysregulated metabolism, and tumorigenesis pathways could be the underlying contributing factors that affect LMG risk stratification. The patients with glioma in the LMG high-risk group showed high sensitivity to EGFR inhibitors. In addition, our nomogram model could effectively predict overall survival with an area under the curve value of 0.894. CONCLUSION: We explored the characteristics of LMGs in glioma and proposed an LMG-based signature. This prognostic model could predict the survival of patients with glioma and help clinical oncologists plan more individualized and effective therapeutic regimens. |
format | Online Article Text |
id | pubmed-9868722 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98687222023-01-24 Characterization of a lactate metabolism-related signature for evaluation of immune features and prediction prognosis in glioma Wu, Zhiqiang Wang, Jing Li, Yanan Liu, Jianmin Kang, Zijian Yan, Wangjun Front Neurol Neurology BACKGROUND: Glioma is one of the most typical tumors in the central nervous system with a poor prognosis, and the optimal management strategy remains controversial. Lactate in the tumor microenvironment is known to promote cancer progression, but its impact on clinical outcomes of glioma is largely unknown. METHODS: Glioma RNA-seq data were obtained from TCGA and GCGA databases. Lactate metabolism genes (LMGs) were then evaluated to construct an LMG model in glioma using Cox and LASSO regression. Immune cell infiltration, immune checkpoint gene expression, enriched pathways, genetic alteration, and drug sensitivity were compared within the risk subgroups. Based on the risk score and clinicopathological features, a nomogram was developed to predict prognosis in patients with glioma. RESULTS: Five genes (LDHA, LDHB, MRS2, SL16A1, and SL25A12) showed a good prognostic value and were used to construct an LMG-based risk score. This risk score was shown as an independent prognostic factor with good predictive power in both training and validation cohorts (p < 0.001). The LMG signature was found to be correlated with the expression of immune checkpoint genes and immune infiltration and could shape the tumor microenvironment. Genetic alteration, dysregulated metabolism, and tumorigenesis pathways could be the underlying contributing factors that affect LMG risk stratification. The patients with glioma in the LMG high-risk group showed high sensitivity to EGFR inhibitors. In addition, our nomogram model could effectively predict overall survival with an area under the curve value of 0.894. CONCLUSION: We explored the characteristics of LMGs in glioma and proposed an LMG-based signature. This prognostic model could predict the survival of patients with glioma and help clinical oncologists plan more individualized and effective therapeutic regimens. Frontiers Media S.A. 2023-01-09 /pmc/articles/PMC9868722/ /pubmed/36698888 http://dx.doi.org/10.3389/fneur.2022.1064349 Text en Copyright © 2023 Wu, Wang, Li, Liu, Kang and Yan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neurology Wu, Zhiqiang Wang, Jing Li, Yanan Liu, Jianmin Kang, Zijian Yan, Wangjun Characterization of a lactate metabolism-related signature for evaluation of immune features and prediction prognosis in glioma |
title | Characterization of a lactate metabolism-related signature for evaluation of immune features and prediction prognosis in glioma |
title_full | Characterization of a lactate metabolism-related signature for evaluation of immune features and prediction prognosis in glioma |
title_fullStr | Characterization of a lactate metabolism-related signature for evaluation of immune features and prediction prognosis in glioma |
title_full_unstemmed | Characterization of a lactate metabolism-related signature for evaluation of immune features and prediction prognosis in glioma |
title_short | Characterization of a lactate metabolism-related signature for evaluation of immune features and prediction prognosis in glioma |
title_sort | characterization of a lactate metabolism-related signature for evaluation of immune features and prediction prognosis in glioma |
topic | Neurology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9868722/ https://www.ncbi.nlm.nih.gov/pubmed/36698888 http://dx.doi.org/10.3389/fneur.2022.1064349 |
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