Cargando…

Synchro-PASEF Allows Precursor-Specific Fragment Ion Extraction and Interference Removal in Data-Independent Acquisition

Data-independent acquisition (DIA) methods have become increasingly popular in mass spectrometry–based proteomics because they enable continuous acquisition of fragment spectra for all precursors simultaneously. However, these advantages come with the challenge of correctly reconstructing the precur...

Descripción completa

Detalles Bibliográficos
Autores principales:	Skowronek, Patricia, Krohs, Florian, Lubeck, Markus, Wallmann, Georg, Itang, Ericka C.M., Koval, Polina, Wahle, Maria, Thielert, Marvin, Meier, Florian, Willems, Sander, Raether, Oliver, Mann, Matthias
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Biochemistry and Molecular Biology 2022
Materias:	Technological Innovation and Resources
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9868879/ https://www.ncbi.nlm.nih.gov/pubmed/36566012 http://dx.doi.org/10.1016/j.mcpro.2022.100489

Ejemplares similares

Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF
por: Skowronek, Patricia, et al.
Publicado: (2022)

Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer
por: Meier, Florian, et al.
Publicado: (2018)

Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant
por: Yu, Fengchao, et al.
Publicado: (2020)

A Standardized and Reproducible Workflow for Membrane Glass Slides in Routine Histology and Spatial Proteomics
por: Nordmann, Thierry M., et al.
Publicado: (2023)

AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization
por: Willems, Sander, et al.
Publicado: (2021)

MaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics
por: Prianichnikov, Nikita, et al.
Publicado: (2020)

SIMSI-Transfer: Software-Assisted Reduction of Missing Values in Phosphoproteomic and Proteomic Isobaric Labeling Data Using Tandem Mass Spectrum Clustering
por: Hamood, Firas, et al.
Publicado: (2022)

Accurate Label-Free Quantification by directLFQ to Compare Unlimited Numbers of Proteomes
por: Ammar, Constantin, et al.
Publicado: (2023)

Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation
por: Thakur, Suman S., et al.
Publicado: (2011)

MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides
por: Wichmann, Christoph, et al.
Publicado: (2019)

pyQms enables universal and accurate quantification of mass spectrometry data
por: Leufken, Johannes, et al.
Publicado: (2017)

Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition
por: Huang, Ting, et al.
Publicado: (2020)

Stable Isotope Labeling of Amino Acids in Flies (SILAF) Reveals Differential Phosphorylation of Mitochondrial Proteins Upon Loss of OXPHOS Subunits
por: Schober, Florian A., et al.
Publicado: (2021)

Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction
por: Pak, HuiSong, et al.
Publicado: (2021)

A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-robust Proteomics
por: Bache, Nicolai, et al.
Publicado: (2018)

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets
por: Perez-Riverol, Yasset, et al.
Publicado: (2016)

The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics([Image: see text])
por: Walzer, Mathias, et al.
Publicado: (2013)

The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium
por: Côté, Richard G., et al.
Publicado: (2012)

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
por: Jones, Andrew R., et al.
Publicado: (2012)

The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience
por: Griss, Johannes, et al.
Publicado: (2014)

Upgrading Synchro-cyclotron
Publicado: (1974)

In Vivo Analysis of Proteomes and Interactomes Using Parallel Affinity Capture (iPAC) Coupled to Mass Spectrometry
por: Rees, Johanna S., et al.
Publicado: (2011)

Inferring Physical Protein Contacts from Large-Scale Purification Data of Protein Complexes
por: Schelhorn, Sven-Eric, et al.
Publicado: (2011)

Published and Perished? The Influence of the Searched Protein Database on the Long-Term Storage of Proteomics Data
por: Griss, Johannes, et al.
Publicado: (2011)

Spectrum-to-Spectrum Searching Using a Proteome-wide Spectral Library
por: Yen, Chia-Yu, et al.
Publicado: (2011)

PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification
por: Zhang, Jing, et al.
Publicado: (2012)

Antibody Colocalization Microarray: A Scalable Technology for Multiplex Protein Analysis in Complex Samples
por: Pla-Roca, M., et al.
Publicado: (2012)

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists
por: Deutsch, Eric W., et al.
Publicado: (2012)

Proteomic Analysis and Discovery Using Affinity Proteomics and Mass Spectrometry
por: Olsson, Niclas, et al.
Publicado: (2011)

High Throughput Isolation and Glycosylation Analysis of IgG–Variability and Heritability of the IgG Glycome in Three Isolated Human Populations
por: Pučić, Maja, et al.
Publicado: (2011)

Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer
por: Michalski, Annette, et al.
Publicado: (2011)

Signaling Network State Predicts Twist-Mediated Effects on Breast Cell Migration Across Diverse Growth Factor Contexts
por: Kim, Hyung-Do, et al.
Publicado: (2011)

Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities
por: Pan, Chongle, et al.
Publicado: (2011)

Enhanced Peptide Identification by Electron Transfer Dissociation Using an Improved Mascot Percolator
por: Wright, James C., et al.
Publicado: (2012)

PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life
por: Wang, M., et al.
Publicado: (2012)

Index-ion Triggered MS2 Ion Quantification: A Novel Proteomics Approach for Reproducible Detection and Quantification of Targeted Proteins in Complex Mixtures
por: Yan, Wei, et al.
Publicado: (2011)

Overcoming Species Boundaries in Peptide Identification with Bayesian Information Criterion-driven Error-tolerant Peptide Search (BICEPS)
por: Renard, Bernhard Y., et al.
Publicado: (2012)

Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline: APPLICATION TO PROTEIN ACETYLATION AND PHOSPHORYLATION
por: Schilling, Birgit, et al.
Publicado: (2012)

Matrix Assisted Ionization Vacuum (MAIV), a New Ionization Method for Biological Materials Analysis Using Mass Spectrometry
por: Inutan, Ellen D., et al.
Publicado: (2013)

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
por: Cox, Jürgen, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_ftd46b9sc5dfqkaajrd297ahei