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Genome of a husavirus from Southern Brazil
New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stool-associated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellula...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Instituto de Medicina Tropical de São Paulo
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870242/ https://www.ncbi.nlm.nih.gov/pubmed/36651466 http://dx.doi.org/10.1590/S1678-9946202365005 |
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author | Demoliner, Meriane Filippi, Micheli Gularte, Juliana Schons da Silva, Mariana Soares de Almeida, Paula Rodrigues Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado |
author_facet | Demoliner, Meriane Filippi, Micheli Gularte, Juliana Schons da Silva, Mariana Soares de Almeida, Paula Rodrigues Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado |
author_sort | Demoliner, Meriane |
collection | PubMed |
description | New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stool-associated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales. |
format | Online Article Text |
id | pubmed-9870242 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Instituto de Medicina Tropical de São Paulo |
record_format | MEDLINE/PubMed |
spelling | pubmed-98702422023-02-01 Genome of a husavirus from Southern Brazil Demoliner, Meriane Filippi, Micheli Gularte, Juliana Schons da Silva, Mariana Soares de Almeida, Paula Rodrigues Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado Rev Inst Med Trop Sao Paulo Brief Communication New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stool-associated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales. Instituto de Medicina Tropical de São Paulo 2023-01-16 /pmc/articles/PMC9870242/ /pubmed/36651466 http://dx.doi.org/10.1590/S1678-9946202365005 Text en https://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Brief Communication Demoliner, Meriane Filippi, Micheli Gularte, Juliana Schons da Silva, Mariana Soares de Almeida, Paula Rodrigues Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado Genome of a husavirus from Southern Brazil |
title | Genome of a husavirus from Southern Brazil |
title_full | Genome of a husavirus from Southern Brazil |
title_fullStr | Genome of a husavirus from Southern Brazil |
title_full_unstemmed | Genome of a husavirus from Southern Brazil |
title_short | Genome of a husavirus from Southern Brazil |
title_sort | genome of a husavirus from southern brazil |
topic | Brief Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870242/ https://www.ncbi.nlm.nih.gov/pubmed/36651466 http://dx.doi.org/10.1590/S1678-9946202365005 |
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