Cargando…

Genome of a husavirus from Southern Brazil

New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stool-associated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellula...

Descripción completa

Detalles Bibliográficos
Autores principales: Demoliner, Meriane, Filippi, Micheli, Gularte, Juliana Schons, da Silva, Mariana Soares, de Almeida, Paula Rodrigues, Pereira, Vyctoria Malayhka de Abreu Góes, Heldt, Fágner Henrique, Spilki, Fernando Rosado
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Instituto de Medicina Tropical de São Paulo 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870242/
https://www.ncbi.nlm.nih.gov/pubmed/36651466
http://dx.doi.org/10.1590/S1678-9946202365005
_version_ 1784876933028249600
author Demoliner, Meriane
Filippi, Micheli
Gularte, Juliana Schons
da Silva, Mariana Soares
de Almeida, Paula Rodrigues
Pereira, Vyctoria Malayhka de Abreu Góes
Heldt, Fágner Henrique
Spilki, Fernando Rosado
author_facet Demoliner, Meriane
Filippi, Micheli
Gularte, Juliana Schons
da Silva, Mariana Soares
de Almeida, Paula Rodrigues
Pereira, Vyctoria Malayhka de Abreu Góes
Heldt, Fágner Henrique
Spilki, Fernando Rosado
author_sort Demoliner, Meriane
collection PubMed
description New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stool-associated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales.
format Online
Article
Text
id pubmed-9870242
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Instituto de Medicina Tropical de São Paulo
record_format MEDLINE/PubMed
spelling pubmed-98702422023-02-01 Genome of a husavirus from Southern Brazil Demoliner, Meriane Filippi, Micheli Gularte, Juliana Schons da Silva, Mariana Soares de Almeida, Paula Rodrigues Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado Rev Inst Med Trop Sao Paulo Brief Communication New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stool-associated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales. Instituto de Medicina Tropical de São Paulo 2023-01-16 /pmc/articles/PMC9870242/ /pubmed/36651466 http://dx.doi.org/10.1590/S1678-9946202365005 Text en https://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Brief Communication
Demoliner, Meriane
Filippi, Micheli
Gularte, Juliana Schons
da Silva, Mariana Soares
de Almeida, Paula Rodrigues
Pereira, Vyctoria Malayhka de Abreu Góes
Heldt, Fágner Henrique
Spilki, Fernando Rosado
Genome of a husavirus from Southern Brazil
title Genome of a husavirus from Southern Brazil
title_full Genome of a husavirus from Southern Brazil
title_fullStr Genome of a husavirus from Southern Brazil
title_full_unstemmed Genome of a husavirus from Southern Brazil
title_short Genome of a husavirus from Southern Brazil
title_sort genome of a husavirus from southern brazil
topic Brief Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870242/
https://www.ncbi.nlm.nih.gov/pubmed/36651466
http://dx.doi.org/10.1590/S1678-9946202365005
work_keys_str_mv AT demolinermeriane genomeofahusavirusfromsouthernbrazil
AT filippimicheli genomeofahusavirusfromsouthernbrazil
AT gulartejulianaschons genomeofahusavirusfromsouthernbrazil
AT dasilvamarianasoares genomeofahusavirusfromsouthernbrazil
AT dealmeidapaularodrigues genomeofahusavirusfromsouthernbrazil
AT pereiravyctoriamalayhkadeabreugoes genomeofahusavirusfromsouthernbrazil
AT heldtfagnerhenrique genomeofahusavirusfromsouthernbrazil
AT spilkifernandorosado genomeofahusavirusfromsouthernbrazil