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Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function

Sensory neurons of the dorsal root ganglion (DRG) are critical for maintaining tissue homeostasis by sensing and initiating responses to stimuli. While most preclinical studies of DRGs are conducted in rodents, much less is known about the mechanisms of sensory perception in primates. We generated a...

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Autores principales: Jung, Min, Dourado, Michelle, Maksymetz, James, Jacobson, Amanda, Laufer, Benjamin I., Baca, Miriam, Foreman, Oded, Hackos, David H., Riol-Blanco, Lorena, Kaminker, Joshua S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870891/
https://www.ncbi.nlm.nih.gov/pubmed/36690629
http://dx.doi.org/10.1038/s41467-023-36014-0
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author Jung, Min
Dourado, Michelle
Maksymetz, James
Jacobson, Amanda
Laufer, Benjamin I.
Baca, Miriam
Foreman, Oded
Hackos, David H.
Riol-Blanco, Lorena
Kaminker, Joshua S.
author_facet Jung, Min
Dourado, Michelle
Maksymetz, James
Jacobson, Amanda
Laufer, Benjamin I.
Baca, Miriam
Foreman, Oded
Hackos, David H.
Riol-Blanco, Lorena
Kaminker, Joshua S.
author_sort Jung, Min
collection PubMed
description Sensory neurons of the dorsal root ganglion (DRG) are critical for maintaining tissue homeostasis by sensing and initiating responses to stimuli. While most preclinical studies of DRGs are conducted in rodents, much less is known about the mechanisms of sensory perception in primates. We generated a transcriptome atlas of mouse, guinea pig, cynomolgus monkey, and human DRGs by implementing a common laboratory workflow and multiple data-integration approaches to generate high-resolution cross-species mappings of sensory neuron subtypes. Using our atlas, we identified conserved core modules highlighting subtype-specific biological processes related to inflammatory response. We also identified divergent expression of key genes involved in DRG function, suggesting species-specific adaptations specifically in nociceptors that likely point to divergent function of nociceptors. Among these, we validated that TAFA4, a member of the druggable genome, was expressed in distinct populations of DRG neurons across species, highlighting species-specific programs that are critical for therapeutic development.
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spelling pubmed-98708912023-01-25 Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function Jung, Min Dourado, Michelle Maksymetz, James Jacobson, Amanda Laufer, Benjamin I. Baca, Miriam Foreman, Oded Hackos, David H. Riol-Blanco, Lorena Kaminker, Joshua S. Nat Commun Article Sensory neurons of the dorsal root ganglion (DRG) are critical for maintaining tissue homeostasis by sensing and initiating responses to stimuli. While most preclinical studies of DRGs are conducted in rodents, much less is known about the mechanisms of sensory perception in primates. We generated a transcriptome atlas of mouse, guinea pig, cynomolgus monkey, and human DRGs by implementing a common laboratory workflow and multiple data-integration approaches to generate high-resolution cross-species mappings of sensory neuron subtypes. Using our atlas, we identified conserved core modules highlighting subtype-specific biological processes related to inflammatory response. We also identified divergent expression of key genes involved in DRG function, suggesting species-specific adaptations specifically in nociceptors that likely point to divergent function of nociceptors. Among these, we validated that TAFA4, a member of the druggable genome, was expressed in distinct populations of DRG neurons across species, highlighting species-specific programs that are critical for therapeutic development. Nature Publishing Group UK 2023-01-23 /pmc/articles/PMC9870891/ /pubmed/36690629 http://dx.doi.org/10.1038/s41467-023-36014-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Jung, Min
Dourado, Michelle
Maksymetz, James
Jacobson, Amanda
Laufer, Benjamin I.
Baca, Miriam
Foreman, Oded
Hackos, David H.
Riol-Blanco, Lorena
Kaminker, Joshua S.
Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function
title Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function
title_full Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function
title_fullStr Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function
title_full_unstemmed Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function
title_short Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function
title_sort cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870891/
https://www.ncbi.nlm.nih.gov/pubmed/36690629
http://dx.doi.org/10.1038/s41467-023-36014-0
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