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Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function
Sensory neurons of the dorsal root ganglion (DRG) are critical for maintaining tissue homeostasis by sensing and initiating responses to stimuli. While most preclinical studies of DRGs are conducted in rodents, much less is known about the mechanisms of sensory perception in primates. We generated a...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870891/ https://www.ncbi.nlm.nih.gov/pubmed/36690629 http://dx.doi.org/10.1038/s41467-023-36014-0 |
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author | Jung, Min Dourado, Michelle Maksymetz, James Jacobson, Amanda Laufer, Benjamin I. Baca, Miriam Foreman, Oded Hackos, David H. Riol-Blanco, Lorena Kaminker, Joshua S. |
author_facet | Jung, Min Dourado, Michelle Maksymetz, James Jacobson, Amanda Laufer, Benjamin I. Baca, Miriam Foreman, Oded Hackos, David H. Riol-Blanco, Lorena Kaminker, Joshua S. |
author_sort | Jung, Min |
collection | PubMed |
description | Sensory neurons of the dorsal root ganglion (DRG) are critical for maintaining tissue homeostasis by sensing and initiating responses to stimuli. While most preclinical studies of DRGs are conducted in rodents, much less is known about the mechanisms of sensory perception in primates. We generated a transcriptome atlas of mouse, guinea pig, cynomolgus monkey, and human DRGs by implementing a common laboratory workflow and multiple data-integration approaches to generate high-resolution cross-species mappings of sensory neuron subtypes. Using our atlas, we identified conserved core modules highlighting subtype-specific biological processes related to inflammatory response. We also identified divergent expression of key genes involved in DRG function, suggesting species-specific adaptations specifically in nociceptors that likely point to divergent function of nociceptors. Among these, we validated that TAFA4, a member of the druggable genome, was expressed in distinct populations of DRG neurons across species, highlighting species-specific programs that are critical for therapeutic development. |
format | Online Article Text |
id | pubmed-9870891 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-98708912023-01-25 Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function Jung, Min Dourado, Michelle Maksymetz, James Jacobson, Amanda Laufer, Benjamin I. Baca, Miriam Foreman, Oded Hackos, David H. Riol-Blanco, Lorena Kaminker, Joshua S. Nat Commun Article Sensory neurons of the dorsal root ganglion (DRG) are critical for maintaining tissue homeostasis by sensing and initiating responses to stimuli. While most preclinical studies of DRGs are conducted in rodents, much less is known about the mechanisms of sensory perception in primates. We generated a transcriptome atlas of mouse, guinea pig, cynomolgus monkey, and human DRGs by implementing a common laboratory workflow and multiple data-integration approaches to generate high-resolution cross-species mappings of sensory neuron subtypes. Using our atlas, we identified conserved core modules highlighting subtype-specific biological processes related to inflammatory response. We also identified divergent expression of key genes involved in DRG function, suggesting species-specific adaptations specifically in nociceptors that likely point to divergent function of nociceptors. Among these, we validated that TAFA4, a member of the druggable genome, was expressed in distinct populations of DRG neurons across species, highlighting species-specific programs that are critical for therapeutic development. Nature Publishing Group UK 2023-01-23 /pmc/articles/PMC9870891/ /pubmed/36690629 http://dx.doi.org/10.1038/s41467-023-36014-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Jung, Min Dourado, Michelle Maksymetz, James Jacobson, Amanda Laufer, Benjamin I. Baca, Miriam Foreman, Oded Hackos, David H. Riol-Blanco, Lorena Kaminker, Joshua S. Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function |
title | Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function |
title_full | Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function |
title_fullStr | Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function |
title_full_unstemmed | Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function |
title_short | Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function |
title_sort | cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870891/ https://www.ncbi.nlm.nih.gov/pubmed/36690629 http://dx.doi.org/10.1038/s41467-023-36014-0 |
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