Cargando…

A computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge

Discovering a meaningful symbolic expression that explains experimental data is a fundamental challenge in many scientific fields. We present a novel, open-source computational framework called Scientist-Machine Equation Detector (SciMED), which integrates scientific discipline wisdom in a scientist...

Descripción completa

Detalles Bibliográficos
Autores principales: Keren, Liron Simon, Liberzon, Alex, Lazebnik, Teddy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870915/
https://www.ncbi.nlm.nih.gov/pubmed/36690644
http://dx.doi.org/10.1038/s41598-023-28328-2
_version_ 1784877073904435200
author Keren, Liron Simon
Liberzon, Alex
Lazebnik, Teddy
author_facet Keren, Liron Simon
Liberzon, Alex
Lazebnik, Teddy
author_sort Keren, Liron Simon
collection PubMed
description Discovering a meaningful symbolic expression that explains experimental data is a fundamental challenge in many scientific fields. We present a novel, open-source computational framework called Scientist-Machine Equation Detector (SciMED), which integrates scientific discipline wisdom in a scientist-in-the-loop approach, with state-of-the-art symbolic regression (SR) methods. SciMED combines a wrapper selection method, that is based on a genetic algorithm, with automatic machine learning and two levels of SR methods. We test SciMED on five configurations of a settling sphere, with and without aerodynamic non-linear drag force, and with excessive noise in the measurements. We show that SciMED is sufficiently robust to discover the correct physically meaningful symbolic expressions from the data, and demonstrate how the integration of domain knowledge enhances its performance. Our results indicate better performance on these tasks than the state-of-the-art SR software packages , even in cases where no knowledge is integrated. Moreover, we demonstrate how SciMED can alert the user about possible missing features, unlike the majority of current SR systems.
format Online
Article
Text
id pubmed-9870915
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-98709152023-01-25 A computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge Keren, Liron Simon Liberzon, Alex Lazebnik, Teddy Sci Rep Article Discovering a meaningful symbolic expression that explains experimental data is a fundamental challenge in many scientific fields. We present a novel, open-source computational framework called Scientist-Machine Equation Detector (SciMED), which integrates scientific discipline wisdom in a scientist-in-the-loop approach, with state-of-the-art symbolic regression (SR) methods. SciMED combines a wrapper selection method, that is based on a genetic algorithm, with automatic machine learning and two levels of SR methods. We test SciMED on five configurations of a settling sphere, with and without aerodynamic non-linear drag force, and with excessive noise in the measurements. We show that SciMED is sufficiently robust to discover the correct physically meaningful symbolic expressions from the data, and demonstrate how the integration of domain knowledge enhances its performance. Our results indicate better performance on these tasks than the state-of-the-art SR software packages , even in cases where no knowledge is integrated. Moreover, we demonstrate how SciMED can alert the user about possible missing features, unlike the majority of current SR systems. Nature Publishing Group UK 2023-01-23 /pmc/articles/PMC9870915/ /pubmed/36690644 http://dx.doi.org/10.1038/s41598-023-28328-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Keren, Liron Simon
Liberzon, Alex
Lazebnik, Teddy
A computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge
title A computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge
title_full A computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge
title_fullStr A computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge
title_full_unstemmed A computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge
title_short A computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge
title_sort computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9870915/
https://www.ncbi.nlm.nih.gov/pubmed/36690644
http://dx.doi.org/10.1038/s41598-023-28328-2
work_keys_str_mv AT kerenlironsimon acomputationalframeworkforphysicsinformedsymbolicregressionwithstraightforwardintegrationofdomainknowledge
AT liberzonalex acomputationalframeworkforphysicsinformedsymbolicregressionwithstraightforwardintegrationofdomainknowledge
AT lazebnikteddy acomputationalframeworkforphysicsinformedsymbolicregressionwithstraightforwardintegrationofdomainknowledge
AT kerenlironsimon computationalframeworkforphysicsinformedsymbolicregressionwithstraightforwardintegrationofdomainknowledge
AT liberzonalex computationalframeworkforphysicsinformedsymbolicregressionwithstraightforwardintegrationofdomainknowledge
AT lazebnikteddy computationalframeworkforphysicsinformedsymbolicregressionwithstraightforwardintegrationofdomainknowledge