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A unified and simple medium for growing model methanogens

Apart from their archetypic use in anaerobic digestion (AD) methanogenic archaea are targeted for a wide range of applications. Using different methanogenic archaea for one specific application requires the optimization of culture media to enable the growth of different strains under identical envir...

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Autores principales: Dzofou Ngoumelah, Daniel, Harnisch, Falk, Sulheim, Snorre, Heggeset, Tonje Marita Bjerkan, Aune, Ingvild Haugnes, Wentzel, Alexander, Kretzschmar, Jörg
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9871610/
https://www.ncbi.nlm.nih.gov/pubmed/36704566
http://dx.doi.org/10.3389/fmicb.2022.1046260
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author Dzofou Ngoumelah, Daniel
Harnisch, Falk
Sulheim, Snorre
Heggeset, Tonje Marita Bjerkan
Aune, Ingvild Haugnes
Wentzel, Alexander
Kretzschmar, Jörg
author_facet Dzofou Ngoumelah, Daniel
Harnisch, Falk
Sulheim, Snorre
Heggeset, Tonje Marita Bjerkan
Aune, Ingvild Haugnes
Wentzel, Alexander
Kretzschmar, Jörg
author_sort Dzofou Ngoumelah, Daniel
collection PubMed
description Apart from their archetypic use in anaerobic digestion (AD) methanogenic archaea are targeted for a wide range of applications. Using different methanogenic archaea for one specific application requires the optimization of culture media to enable the growth of different strains under identical environmental conditions, e.g., in microbial electrochemical technologies (MET) for (bio)electromethanation. Here we present a new culture medium (BFS01) adapted from the DSM-120 medium by omitting resazurin, yeast extract, casitone, and using a low salt concentration, that was optimized for Methanosarcina barkeri, Methanobacterium formicicum, and Methanothrix soehngenii. The aim was to provide a medium for follow-up co-culture studies using specific methanogens and Geobacter spp. dominated biofilm anodes. All three methanogens showed growth and activity in the BFS01 medium. This was demonstrated by estimating the specific growth rates ( [Formula: see text] ) and doubling times ( [Formula: see text] ) of each methanogen. The [Formula: see text] and [Formula: see text] based on methane accumulation in the headspace showed values consistent with literature values for M. barkeri and M. soehngenii. However, [Formula: see text] and [Formula: see text] based on methane accumulation in the headspace differed from literature data for M. formicicum but still allowed sufficient growth. The lowered salt concentration and the omission of chemically complex organic components in the medium may have led to the observed deviation from [Formula: see text] and [Formula: see text] for M. formicicum as well as the changed morphology. 16S rRNA gene-based amplicon sequencing and whole genome nanopore sequencing further confirmed purity and species identity.
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spelling pubmed-98716102023-01-25 A unified and simple medium for growing model methanogens Dzofou Ngoumelah, Daniel Harnisch, Falk Sulheim, Snorre Heggeset, Tonje Marita Bjerkan Aune, Ingvild Haugnes Wentzel, Alexander Kretzschmar, Jörg Front Microbiol Microbiology Apart from their archetypic use in anaerobic digestion (AD) methanogenic archaea are targeted for a wide range of applications. Using different methanogenic archaea for one specific application requires the optimization of culture media to enable the growth of different strains under identical environmental conditions, e.g., in microbial electrochemical technologies (MET) for (bio)electromethanation. Here we present a new culture medium (BFS01) adapted from the DSM-120 medium by omitting resazurin, yeast extract, casitone, and using a low salt concentration, that was optimized for Methanosarcina barkeri, Methanobacterium formicicum, and Methanothrix soehngenii. The aim was to provide a medium for follow-up co-culture studies using specific methanogens and Geobacter spp. dominated biofilm anodes. All three methanogens showed growth and activity in the BFS01 medium. This was demonstrated by estimating the specific growth rates ( [Formula: see text] ) and doubling times ( [Formula: see text] ) of each methanogen. The [Formula: see text] and [Formula: see text] based on methane accumulation in the headspace showed values consistent with literature values for M. barkeri and M. soehngenii. However, [Formula: see text] and [Formula: see text] based on methane accumulation in the headspace differed from literature data for M. formicicum but still allowed sufficient growth. The lowered salt concentration and the omission of chemically complex organic components in the medium may have led to the observed deviation from [Formula: see text] and [Formula: see text] for M. formicicum as well as the changed morphology. 16S rRNA gene-based amplicon sequencing and whole genome nanopore sequencing further confirmed purity and species identity. Frontiers Media S.A. 2023-01-10 /pmc/articles/PMC9871610/ /pubmed/36704566 http://dx.doi.org/10.3389/fmicb.2022.1046260 Text en Copyright © 2023 Dzofou Ngoumelah, Harnisch, Sulheim, Heggeset, Aune, Wentzel and Kretzschmar. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Dzofou Ngoumelah, Daniel
Harnisch, Falk
Sulheim, Snorre
Heggeset, Tonje Marita Bjerkan
Aune, Ingvild Haugnes
Wentzel, Alexander
Kretzschmar, Jörg
A unified and simple medium for growing model methanogens
title A unified and simple medium for growing model methanogens
title_full A unified and simple medium for growing model methanogens
title_fullStr A unified and simple medium for growing model methanogens
title_full_unstemmed A unified and simple medium for growing model methanogens
title_short A unified and simple medium for growing model methanogens
title_sort unified and simple medium for growing model methanogens
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9871610/
https://www.ncbi.nlm.nih.gov/pubmed/36704566
http://dx.doi.org/10.3389/fmicb.2022.1046260
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