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A unified and simple medium for growing model methanogens
Apart from their archetypic use in anaerobic digestion (AD) methanogenic archaea are targeted for a wide range of applications. Using different methanogenic archaea for one specific application requires the optimization of culture media to enable the growth of different strains under identical envir...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9871610/ https://www.ncbi.nlm.nih.gov/pubmed/36704566 http://dx.doi.org/10.3389/fmicb.2022.1046260 |
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author | Dzofou Ngoumelah, Daniel Harnisch, Falk Sulheim, Snorre Heggeset, Tonje Marita Bjerkan Aune, Ingvild Haugnes Wentzel, Alexander Kretzschmar, Jörg |
author_facet | Dzofou Ngoumelah, Daniel Harnisch, Falk Sulheim, Snorre Heggeset, Tonje Marita Bjerkan Aune, Ingvild Haugnes Wentzel, Alexander Kretzschmar, Jörg |
author_sort | Dzofou Ngoumelah, Daniel |
collection | PubMed |
description | Apart from their archetypic use in anaerobic digestion (AD) methanogenic archaea are targeted for a wide range of applications. Using different methanogenic archaea for one specific application requires the optimization of culture media to enable the growth of different strains under identical environmental conditions, e.g., in microbial electrochemical technologies (MET) for (bio)electromethanation. Here we present a new culture medium (BFS01) adapted from the DSM-120 medium by omitting resazurin, yeast extract, casitone, and using a low salt concentration, that was optimized for Methanosarcina barkeri, Methanobacterium formicicum, and Methanothrix soehngenii. The aim was to provide a medium for follow-up co-culture studies using specific methanogens and Geobacter spp. dominated biofilm anodes. All three methanogens showed growth and activity in the BFS01 medium. This was demonstrated by estimating the specific growth rates ( [Formula: see text] ) and doubling times ( [Formula: see text] ) of each methanogen. The [Formula: see text] and [Formula: see text] based on methane accumulation in the headspace showed values consistent with literature values for M. barkeri and M. soehngenii. However, [Formula: see text] and [Formula: see text] based on methane accumulation in the headspace differed from literature data for M. formicicum but still allowed sufficient growth. The lowered salt concentration and the omission of chemically complex organic components in the medium may have led to the observed deviation from [Formula: see text] and [Formula: see text] for M. formicicum as well as the changed morphology. 16S rRNA gene-based amplicon sequencing and whole genome nanopore sequencing further confirmed purity and species identity. |
format | Online Article Text |
id | pubmed-9871610 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98716102023-01-25 A unified and simple medium for growing model methanogens Dzofou Ngoumelah, Daniel Harnisch, Falk Sulheim, Snorre Heggeset, Tonje Marita Bjerkan Aune, Ingvild Haugnes Wentzel, Alexander Kretzschmar, Jörg Front Microbiol Microbiology Apart from their archetypic use in anaerobic digestion (AD) methanogenic archaea are targeted for a wide range of applications. Using different methanogenic archaea for one specific application requires the optimization of culture media to enable the growth of different strains under identical environmental conditions, e.g., in microbial electrochemical technologies (MET) for (bio)electromethanation. Here we present a new culture medium (BFS01) adapted from the DSM-120 medium by omitting resazurin, yeast extract, casitone, and using a low salt concentration, that was optimized for Methanosarcina barkeri, Methanobacterium formicicum, and Methanothrix soehngenii. The aim was to provide a medium for follow-up co-culture studies using specific methanogens and Geobacter spp. dominated biofilm anodes. All three methanogens showed growth and activity in the BFS01 medium. This was demonstrated by estimating the specific growth rates ( [Formula: see text] ) and doubling times ( [Formula: see text] ) of each methanogen. The [Formula: see text] and [Formula: see text] based on methane accumulation in the headspace showed values consistent with literature values for M. barkeri and M. soehngenii. However, [Formula: see text] and [Formula: see text] based on methane accumulation in the headspace differed from literature data for M. formicicum but still allowed sufficient growth. The lowered salt concentration and the omission of chemically complex organic components in the medium may have led to the observed deviation from [Formula: see text] and [Formula: see text] for M. formicicum as well as the changed morphology. 16S rRNA gene-based amplicon sequencing and whole genome nanopore sequencing further confirmed purity and species identity. Frontiers Media S.A. 2023-01-10 /pmc/articles/PMC9871610/ /pubmed/36704566 http://dx.doi.org/10.3389/fmicb.2022.1046260 Text en Copyright © 2023 Dzofou Ngoumelah, Harnisch, Sulheim, Heggeset, Aune, Wentzel and Kretzschmar. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Dzofou Ngoumelah, Daniel Harnisch, Falk Sulheim, Snorre Heggeset, Tonje Marita Bjerkan Aune, Ingvild Haugnes Wentzel, Alexander Kretzschmar, Jörg A unified and simple medium for growing model methanogens |
title | A unified and simple medium for growing model methanogens |
title_full | A unified and simple medium for growing model methanogens |
title_fullStr | A unified and simple medium for growing model methanogens |
title_full_unstemmed | A unified and simple medium for growing model methanogens |
title_short | A unified and simple medium for growing model methanogens |
title_sort | unified and simple medium for growing model methanogens |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9871610/ https://www.ncbi.nlm.nih.gov/pubmed/36704566 http://dx.doi.org/10.3389/fmicb.2022.1046260 |
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