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Generating simple classification rules to predict local surges in COVID-19 hospitalizations

Low rates of vaccination, emergence of novel variants of SARS-CoV-2, and increasing transmission relating to seasonal changes and relaxation of mitigation measures leave many US communities at risk for surges of COVID-19 that might strain hospital capacity, as in previous waves. The trajectories of...

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Autores principales: Yaesoubi, Reza, You, Shiying, Xi, Qin, Menzies, Nicolas A., Tuite, Ashleigh, Grad, Yonatan H., Salomon, Joshua A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9872755/
https://www.ncbi.nlm.nih.gov/pubmed/36692583
http://dx.doi.org/10.1007/s10729-023-09629-4
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author Yaesoubi, Reza
You, Shiying
Xi, Qin
Menzies, Nicolas A.
Tuite, Ashleigh
Grad, Yonatan H.
Salomon, Joshua A.
author_facet Yaesoubi, Reza
You, Shiying
Xi, Qin
Menzies, Nicolas A.
Tuite, Ashleigh
Grad, Yonatan H.
Salomon, Joshua A.
author_sort Yaesoubi, Reza
collection PubMed
description Low rates of vaccination, emergence of novel variants of SARS-CoV-2, and increasing transmission relating to seasonal changes and relaxation of mitigation measures leave many US communities at risk for surges of COVID-19 that might strain hospital capacity, as in previous waves. The trajectories of COVID-19 hospitalizations differ across communities depending on their age distributions, vaccination coverage, cumulative incidence, and adoption of risk mitigating behaviors. Yet, existing predictive models of COVID-19 hospitalizations are almost exclusively focused on national- and state-level predictions. This leaves local policymakers in urgent need of tools that can provide early warnings about the possibility that COVID-19 hospitalizations may rise to levels that exceed local capacity. In this work, we develop a framework to generate simple classification rules to predict whether COVID-19 hospitalization will exceed the local hospitalization capacity within a 4- or 8-week period if no additional mitigating strategies are implemented during this time. This framework uses a simulation model of SARS-CoV-2 transmission and COVID-19 hospitalizations in the US to train classification decision trees that are robust to changes in the data-generating process and future uncertainties. These generated classification rules use real-time data related to hospital occupancy and new hospitalizations associated with COVID-19, and when available, genomic surveillance of SARS-CoV-2. We show that these classification rules present reasonable accuracy, sensitivity, and specificity (all ≥ 80%) in predicting local surges in hospitalizations under numerous simulated scenarios, which capture substantial uncertainties over the future trajectories of COVID-19. Our proposed classification rules are simple, visual, and straightforward to use in practice by local decision makers without the need to perform numerical computations. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10729-023-09629-4.
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spelling pubmed-98727552023-01-25 Generating simple classification rules to predict local surges in COVID-19 hospitalizations Yaesoubi, Reza You, Shiying Xi, Qin Menzies, Nicolas A. Tuite, Ashleigh Grad, Yonatan H. Salomon, Joshua A. Health Care Manag Sci Article Low rates of vaccination, emergence of novel variants of SARS-CoV-2, and increasing transmission relating to seasonal changes and relaxation of mitigation measures leave many US communities at risk for surges of COVID-19 that might strain hospital capacity, as in previous waves. The trajectories of COVID-19 hospitalizations differ across communities depending on their age distributions, vaccination coverage, cumulative incidence, and adoption of risk mitigating behaviors. Yet, existing predictive models of COVID-19 hospitalizations are almost exclusively focused on national- and state-level predictions. This leaves local policymakers in urgent need of tools that can provide early warnings about the possibility that COVID-19 hospitalizations may rise to levels that exceed local capacity. In this work, we develop a framework to generate simple classification rules to predict whether COVID-19 hospitalization will exceed the local hospitalization capacity within a 4- or 8-week period if no additional mitigating strategies are implemented during this time. This framework uses a simulation model of SARS-CoV-2 transmission and COVID-19 hospitalizations in the US to train classification decision trees that are robust to changes in the data-generating process and future uncertainties. These generated classification rules use real-time data related to hospital occupancy and new hospitalizations associated with COVID-19, and when available, genomic surveillance of SARS-CoV-2. We show that these classification rules present reasonable accuracy, sensitivity, and specificity (all ≥ 80%) in predicting local surges in hospitalizations under numerous simulated scenarios, which capture substantial uncertainties over the future trajectories of COVID-19. Our proposed classification rules are simple, visual, and straightforward to use in practice by local decision makers without the need to perform numerical computations. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10729-023-09629-4. Springer US 2023-01-24 2023 /pmc/articles/PMC9872755/ /pubmed/36692583 http://dx.doi.org/10.1007/s10729-023-09629-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yaesoubi, Reza
You, Shiying
Xi, Qin
Menzies, Nicolas A.
Tuite, Ashleigh
Grad, Yonatan H.
Salomon, Joshua A.
Generating simple classification rules to predict local surges in COVID-19 hospitalizations
title Generating simple classification rules to predict local surges in COVID-19 hospitalizations
title_full Generating simple classification rules to predict local surges in COVID-19 hospitalizations
title_fullStr Generating simple classification rules to predict local surges in COVID-19 hospitalizations
title_full_unstemmed Generating simple classification rules to predict local surges in COVID-19 hospitalizations
title_short Generating simple classification rules to predict local surges in COVID-19 hospitalizations
title_sort generating simple classification rules to predict local surges in covid-19 hospitalizations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9872755/
https://www.ncbi.nlm.nih.gov/pubmed/36692583
http://dx.doi.org/10.1007/s10729-023-09629-4
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