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Localization of lung abnormalities on chest X-rays using self-supervised equivariant attention
Chest X-Ray (CXR) images provide most anatomical details and the abnormalities on a 2D plane. Therefore, a 2D view of the 3D anatomy is sometimes sufficient for the initial diagnosis. However, close to fourteen commonly occurring diseases are sometimes difficult to identify by visually inspecting th...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Korean Society of Medical and Biological Engineering
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9873849/ https://www.ncbi.nlm.nih.gov/pubmed/36711159 http://dx.doi.org/10.1007/s13534-022-00249-5 |
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author | D’Souza, Gavin Reddy, N. V. Subba Manjunath, K. N. |
author_facet | D’Souza, Gavin Reddy, N. V. Subba Manjunath, K. N. |
author_sort | D’Souza, Gavin |
collection | PubMed |
description | Chest X-Ray (CXR) images provide most anatomical details and the abnormalities on a 2D plane. Therefore, a 2D view of the 3D anatomy is sometimes sufficient for the initial diagnosis. However, close to fourteen commonly occurring diseases are sometimes difficult to identify by visually inspecting the images. Therefore, there is a drift toward developing computer-aided assistive systems to help radiologists. This paper proposes a deep learning model for the classification and localization of chest diseases by using image-level annotations. The model consists of a modified Resnet50 backbone for extracting feature corpus from the images, a classifier, and a pixel correlation module (PCM). During PCM training, the network is a weight-shared siamese architecture where the first branch applies the affine transform to the image before feeding to the network, while the second applies the same transform to the network output. The method was evaluated on CXR from the clinical center in the ratio of 70:20 for training and testing. The model was developed and tested using the cloud computing platform Google Colaboratory (NVidia Tesla P100 GPU, 16 GB of RAM). A radiologist subjectively validated the results. Our model trained with the configurations mentioned in this paper outperformed benchmark results. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13534-022-00249-5. |
format | Online Article Text |
id | pubmed-9873849 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Korean Society of Medical and Biological Engineering |
record_format | MEDLINE/PubMed |
spelling | pubmed-98738492023-01-26 Localization of lung abnormalities on chest X-rays using self-supervised equivariant attention D’Souza, Gavin Reddy, N. V. Subba Manjunath, K. N. Biomed Eng Lett Original Article Chest X-Ray (CXR) images provide most anatomical details and the abnormalities on a 2D plane. Therefore, a 2D view of the 3D anatomy is sometimes sufficient for the initial diagnosis. However, close to fourteen commonly occurring diseases are sometimes difficult to identify by visually inspecting the images. Therefore, there is a drift toward developing computer-aided assistive systems to help radiologists. This paper proposes a deep learning model for the classification and localization of chest diseases by using image-level annotations. The model consists of a modified Resnet50 backbone for extracting feature corpus from the images, a classifier, and a pixel correlation module (PCM). During PCM training, the network is a weight-shared siamese architecture where the first branch applies the affine transform to the image before feeding to the network, while the second applies the same transform to the network output. The method was evaluated on CXR from the clinical center in the ratio of 70:20 for training and testing. The model was developed and tested using the cloud computing platform Google Colaboratory (NVidia Tesla P100 GPU, 16 GB of RAM). A radiologist subjectively validated the results. Our model trained with the configurations mentioned in this paper outperformed benchmark results. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13534-022-00249-5. The Korean Society of Medical and Biological Engineering 2022-11-03 /pmc/articles/PMC9873849/ /pubmed/36711159 http://dx.doi.org/10.1007/s13534-022-00249-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article D’Souza, Gavin Reddy, N. V. Subba Manjunath, K. N. Localization of lung abnormalities on chest X-rays using self-supervised equivariant attention |
title | Localization of lung abnormalities on chest X-rays using self-supervised equivariant attention |
title_full | Localization of lung abnormalities on chest X-rays using self-supervised equivariant attention |
title_fullStr | Localization of lung abnormalities on chest X-rays using self-supervised equivariant attention |
title_full_unstemmed | Localization of lung abnormalities on chest X-rays using self-supervised equivariant attention |
title_short | Localization of lung abnormalities on chest X-rays using self-supervised equivariant attention |
title_sort | localization of lung abnormalities on chest x-rays using self-supervised equivariant attention |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9873849/ https://www.ncbi.nlm.nih.gov/pubmed/36711159 http://dx.doi.org/10.1007/s13534-022-00249-5 |
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