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Machine Learning Assisted Clustering of Nanoparticle Structures

[Image: see text] We propose a scheme for the automatic separation (i.e., clustering) of data sets composed of several nanoparticle (NP) structures by means of Machine Learning techniques. These data sets originate from atomistic simulations, such as global optimizations searches and molecular dynam...

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Detalles Bibliográficos
Autores principales: Roncaglia, Cesare, Ferrando, Riccardo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9875306/
https://www.ncbi.nlm.nih.gov/pubmed/36597194
http://dx.doi.org/10.1021/acs.jcim.2c01203
Descripción
Sumario:[Image: see text] We propose a scheme for the automatic separation (i.e., clustering) of data sets composed of several nanoparticle (NP) structures by means of Machine Learning techniques. These data sets originate from atomistic simulations, such as global optimizations searches and molecular dynamics simulations, which can produce large outputs that are often difficult to inspect by hand. By combining a description of NPs based on their local atomic environment with unsupervised learning algorithms, such as K-Means and Gaussian mixture model, we are able to distinguish between different structural motifs (e.g., icosahedra, decahedra, polyicosahedra, fcc fragments, twins, and so on). We show that this method is able to improve over the results obtained previously thanks to the successful implementation of a more detailed description of NPs, especially for systems showing a large variety of structures, including disordered ones.