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Machine Learning Assisted Clustering of Nanoparticle Structures
[Image: see text] We propose a scheme for the automatic separation (i.e., clustering) of data sets composed of several nanoparticle (NP) structures by means of Machine Learning techniques. These data sets originate from atomistic simulations, such as global optimizations searches and molecular dynam...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9875306/ https://www.ncbi.nlm.nih.gov/pubmed/36597194 http://dx.doi.org/10.1021/acs.jcim.2c01203 |
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author | Roncaglia, Cesare Ferrando, Riccardo |
author_facet | Roncaglia, Cesare Ferrando, Riccardo |
author_sort | Roncaglia, Cesare |
collection | PubMed |
description | [Image: see text] We propose a scheme for the automatic separation (i.e., clustering) of data sets composed of several nanoparticle (NP) structures by means of Machine Learning techniques. These data sets originate from atomistic simulations, such as global optimizations searches and molecular dynamics simulations, which can produce large outputs that are often difficult to inspect by hand. By combining a description of NPs based on their local atomic environment with unsupervised learning algorithms, such as K-Means and Gaussian mixture model, we are able to distinguish between different structural motifs (e.g., icosahedra, decahedra, polyicosahedra, fcc fragments, twins, and so on). We show that this method is able to improve over the results obtained previously thanks to the successful implementation of a more detailed description of NPs, especially for systems showing a large variety of structures, including disordered ones. |
format | Online Article Text |
id | pubmed-9875306 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-98753062023-01-26 Machine Learning Assisted Clustering of Nanoparticle Structures Roncaglia, Cesare Ferrando, Riccardo J Chem Inf Model [Image: see text] We propose a scheme for the automatic separation (i.e., clustering) of data sets composed of several nanoparticle (NP) structures by means of Machine Learning techniques. These data sets originate from atomistic simulations, such as global optimizations searches and molecular dynamics simulations, which can produce large outputs that are often difficult to inspect by hand. By combining a description of NPs based on their local atomic environment with unsupervised learning algorithms, such as K-Means and Gaussian mixture model, we are able to distinguish between different structural motifs (e.g., icosahedra, decahedra, polyicosahedra, fcc fragments, twins, and so on). We show that this method is able to improve over the results obtained previously thanks to the successful implementation of a more detailed description of NPs, especially for systems showing a large variety of structures, including disordered ones. American Chemical Society 2023-01-04 /pmc/articles/PMC9875306/ /pubmed/36597194 http://dx.doi.org/10.1021/acs.jcim.2c01203 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Roncaglia, Cesare Ferrando, Riccardo Machine Learning Assisted Clustering of Nanoparticle Structures |
title | Machine Learning
Assisted Clustering of Nanoparticle
Structures |
title_full | Machine Learning
Assisted Clustering of Nanoparticle
Structures |
title_fullStr | Machine Learning
Assisted Clustering of Nanoparticle
Structures |
title_full_unstemmed | Machine Learning
Assisted Clustering of Nanoparticle
Structures |
title_short | Machine Learning
Assisted Clustering of Nanoparticle
Structures |
title_sort | machine learning
assisted clustering of nanoparticle
structures |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9875306/ https://www.ncbi.nlm.nih.gov/pubmed/36597194 http://dx.doi.org/10.1021/acs.jcim.2c01203 |
work_keys_str_mv | AT roncagliacesare machinelearningassistedclusteringofnanoparticlestructures AT ferrandoriccardo machinelearningassistedclusteringofnanoparticlestructures |