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Machine Learning Assisted Clustering of Nanoparticle Structures

[Image: see text] We propose a scheme for the automatic separation (i.e., clustering) of data sets composed of several nanoparticle (NP) structures by means of Machine Learning techniques. These data sets originate from atomistic simulations, such as global optimizations searches and molecular dynam...

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Detalles Bibliográficos
Autores principales: Roncaglia, Cesare, Ferrando, Riccardo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9875306/
https://www.ncbi.nlm.nih.gov/pubmed/36597194
http://dx.doi.org/10.1021/acs.jcim.2c01203
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author Roncaglia, Cesare
Ferrando, Riccardo
author_facet Roncaglia, Cesare
Ferrando, Riccardo
author_sort Roncaglia, Cesare
collection PubMed
description [Image: see text] We propose a scheme for the automatic separation (i.e., clustering) of data sets composed of several nanoparticle (NP) structures by means of Machine Learning techniques. These data sets originate from atomistic simulations, such as global optimizations searches and molecular dynamics simulations, which can produce large outputs that are often difficult to inspect by hand. By combining a description of NPs based on their local atomic environment with unsupervised learning algorithms, such as K-Means and Gaussian mixture model, we are able to distinguish between different structural motifs (e.g., icosahedra, decahedra, polyicosahedra, fcc fragments, twins, and so on). We show that this method is able to improve over the results obtained previously thanks to the successful implementation of a more detailed description of NPs, especially for systems showing a large variety of structures, including disordered ones.
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spelling pubmed-98753062023-01-26 Machine Learning Assisted Clustering of Nanoparticle Structures Roncaglia, Cesare Ferrando, Riccardo J Chem Inf Model [Image: see text] We propose a scheme for the automatic separation (i.e., clustering) of data sets composed of several nanoparticle (NP) structures by means of Machine Learning techniques. These data sets originate from atomistic simulations, such as global optimizations searches and molecular dynamics simulations, which can produce large outputs that are often difficult to inspect by hand. By combining a description of NPs based on their local atomic environment with unsupervised learning algorithms, such as K-Means and Gaussian mixture model, we are able to distinguish between different structural motifs (e.g., icosahedra, decahedra, polyicosahedra, fcc fragments, twins, and so on). We show that this method is able to improve over the results obtained previously thanks to the successful implementation of a more detailed description of NPs, especially for systems showing a large variety of structures, including disordered ones. American Chemical Society 2023-01-04 /pmc/articles/PMC9875306/ /pubmed/36597194 http://dx.doi.org/10.1021/acs.jcim.2c01203 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Roncaglia, Cesare
Ferrando, Riccardo
Machine Learning Assisted Clustering of Nanoparticle Structures
title Machine Learning Assisted Clustering of Nanoparticle Structures
title_full Machine Learning Assisted Clustering of Nanoparticle Structures
title_fullStr Machine Learning Assisted Clustering of Nanoparticle Structures
title_full_unstemmed Machine Learning Assisted Clustering of Nanoparticle Structures
title_short Machine Learning Assisted Clustering of Nanoparticle Structures
title_sort machine learning assisted clustering of nanoparticle structures
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9875306/
https://www.ncbi.nlm.nih.gov/pubmed/36597194
http://dx.doi.org/10.1021/acs.jcim.2c01203
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