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Developing a Bayesian hierarchical model for a prospective individual patient data meta-analysis with continuous monitoring
BACKGROUND: Numerous clinical trials have been initiated to find effective treatments for COVID-19. These trials have often been initiated in regions where the pandemic has already peaked. Consequently, achieving full enrollment in a single trial might require additional COVID-19 surges in the same...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9875783/ https://www.ncbi.nlm.nih.gov/pubmed/36698073 http://dx.doi.org/10.1186/s12874-022-01813-4 |
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author | Wu, Danni Goldfeld, Keith S. Petkova, Eva |
author_facet | Wu, Danni Goldfeld, Keith S. Petkova, Eva |
author_sort | Wu, Danni |
collection | PubMed |
description | BACKGROUND: Numerous clinical trials have been initiated to find effective treatments for COVID-19. These trials have often been initiated in regions where the pandemic has already peaked. Consequently, achieving full enrollment in a single trial might require additional COVID-19 surges in the same location over several years. This has inspired us to pool individual patient data (IPD) from ongoing, paused, prematurely-terminated, or completed randomized controlled trials (RCTs) in real-time, to find an effective treatment as quickly as possible in light of the pandemic crisis. However, pooling across trials introduces enormous uncertainties in study design (e.g., the number of RCTs and sample sizes might be unknown in advance). We sought to develop a versatile treatment efficacy assessment model that accounts for these uncertainties while allowing for continuous monitoring throughout the study using Bayesian monitoring techniques. METHODS: We provide a detailed look at the challenges and solutions for model development, describing the process that used extensive simulations to enable us to finalize the analysis plan. This includes establishing prior distribution assumptions, assessing and improving model convergence under different study composition scenarios, and assessing whether we can extend the model to accommodate multi-site RCTs and evaluate heterogeneous treatment effects. In addition, we recognized that we would need to assess our model for goodness-of-fit, so we explored an approach that used posterior predictive checking. Lastly, given the urgency of the research in the context of evolving pandemic, we were committed to frequent monitoring of the data to assess efficacy, and we set Bayesian monitoring rules calibrated for type 1 error rate and power. RESULTS: The primary outcome is an 11-point ordinal scale. We present the operating characteristics of the proposed cumulative proportional odds model for estimating treatment effectiveness. The model can estimate the treatment’s effect under enormous uncertainties in study design. We investigate to what degree the proportional odds assumption has to be violated to render the model inaccurate. We demonstrate the flexibility of a Bayesian monitoring approach by performing frequent interim analyses without increasing the probability of erroneous conclusions. CONCLUSION: This paper describes a translatable framework using simulation to support the design of prospective IPD meta-analyses. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-022-01813-4. |
format | Online Article Text |
id | pubmed-9875783 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-98757832023-01-25 Developing a Bayesian hierarchical model for a prospective individual patient data meta-analysis with continuous monitoring Wu, Danni Goldfeld, Keith S. Petkova, Eva BMC Med Res Methodol Research BACKGROUND: Numerous clinical trials have been initiated to find effective treatments for COVID-19. These trials have often been initiated in regions where the pandemic has already peaked. Consequently, achieving full enrollment in a single trial might require additional COVID-19 surges in the same location over several years. This has inspired us to pool individual patient data (IPD) from ongoing, paused, prematurely-terminated, or completed randomized controlled trials (RCTs) in real-time, to find an effective treatment as quickly as possible in light of the pandemic crisis. However, pooling across trials introduces enormous uncertainties in study design (e.g., the number of RCTs and sample sizes might be unknown in advance). We sought to develop a versatile treatment efficacy assessment model that accounts for these uncertainties while allowing for continuous monitoring throughout the study using Bayesian monitoring techniques. METHODS: We provide a detailed look at the challenges and solutions for model development, describing the process that used extensive simulations to enable us to finalize the analysis plan. This includes establishing prior distribution assumptions, assessing and improving model convergence under different study composition scenarios, and assessing whether we can extend the model to accommodate multi-site RCTs and evaluate heterogeneous treatment effects. In addition, we recognized that we would need to assess our model for goodness-of-fit, so we explored an approach that used posterior predictive checking. Lastly, given the urgency of the research in the context of evolving pandemic, we were committed to frequent monitoring of the data to assess efficacy, and we set Bayesian monitoring rules calibrated for type 1 error rate and power. RESULTS: The primary outcome is an 11-point ordinal scale. We present the operating characteristics of the proposed cumulative proportional odds model for estimating treatment effectiveness. The model can estimate the treatment’s effect under enormous uncertainties in study design. We investigate to what degree the proportional odds assumption has to be violated to render the model inaccurate. We demonstrate the flexibility of a Bayesian monitoring approach by performing frequent interim analyses without increasing the probability of erroneous conclusions. CONCLUSION: This paper describes a translatable framework using simulation to support the design of prospective IPD meta-analyses. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-022-01813-4. BioMed Central 2023-01-25 /pmc/articles/PMC9875783/ /pubmed/36698073 http://dx.doi.org/10.1186/s12874-022-01813-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Wu, Danni Goldfeld, Keith S. Petkova, Eva Developing a Bayesian hierarchical model for a prospective individual patient data meta-analysis with continuous monitoring |
title | Developing a Bayesian hierarchical model for a prospective individual patient data meta-analysis with continuous monitoring |
title_full | Developing a Bayesian hierarchical model for a prospective individual patient data meta-analysis with continuous monitoring |
title_fullStr | Developing a Bayesian hierarchical model for a prospective individual patient data meta-analysis with continuous monitoring |
title_full_unstemmed | Developing a Bayesian hierarchical model for a prospective individual patient data meta-analysis with continuous monitoring |
title_short | Developing a Bayesian hierarchical model for a prospective individual patient data meta-analysis with continuous monitoring |
title_sort | developing a bayesian hierarchical model for a prospective individual patient data meta-analysis with continuous monitoring |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9875783/ https://www.ncbi.nlm.nih.gov/pubmed/36698073 http://dx.doi.org/10.1186/s12874-022-01813-4 |
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