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Iterated cross validation method for prediction of survival in diffuse large B-cell lymphoma for small size dataset
Efforts have been made to improve the risk stratification model for patients with diffuse large B-cell lymphoma (DLBCL). This study aimed to evaluate the disease prognosis using machine learning models with iterated cross validation (CV) method. A total of 122 patients with pathologically confirmed...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9876907/ https://www.ncbi.nlm.nih.gov/pubmed/36697456 http://dx.doi.org/10.1038/s41598-023-28394-6 |
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author | Chang, Chin-Chuan Chen, Chien-Hua Hsieh, Jer-Guang Jeng, Jyh-Horng |
author_facet | Chang, Chin-Chuan Chen, Chien-Hua Hsieh, Jer-Guang Jeng, Jyh-Horng |
author_sort | Chang, Chin-Chuan |
collection | PubMed |
description | Efforts have been made to improve the risk stratification model for patients with diffuse large B-cell lymphoma (DLBCL). This study aimed to evaluate the disease prognosis using machine learning models with iterated cross validation (CV) method. A total of 122 patients with pathologically confirmed DLBCL and receiving rituximab-containing chemotherapy were enrolled. Contributions of clinical, laboratory, and metabolic imaging parameters from fluorine-18 fluorodeoxyglucose (FDG) positron emission tomography/computed tomography (PET/CT) scans to the prognosis were evaluated using five regression models, namely logistic regression, random forest, support vector classifier (SVC), deep neural network (DNN), and fuzzy neural network models. Binary classification predictions for 3-year progression free survival (PFS) and 3-year overall survival (OS) were conducted. The 10-iterated fivefold CV with shuffling process was conducted to predict the capability of learning machines. The median PFS and OS were 41.0 and 43.6 months, respectively. Two indicators were found to be independent predictors for prognosis: international prognostic index and total metabolic tumor volume (MTVsum) from FDG PET/CT. For PFS, SVC and DNN (both with accuracy 71%) have the best predictive results, of which outperformed other algorithms. For OS, the DNN has the best predictive result (accuracy 76%). Using clinical and metabolic parameters as input variables, the machine learning methods with iterated CV method add the predictive values for PFS and OS evaluation in DLBCL patients. |
format | Online Article Text |
id | pubmed-9876907 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-98769072023-01-27 Iterated cross validation method for prediction of survival in diffuse large B-cell lymphoma for small size dataset Chang, Chin-Chuan Chen, Chien-Hua Hsieh, Jer-Guang Jeng, Jyh-Horng Sci Rep Article Efforts have been made to improve the risk stratification model for patients with diffuse large B-cell lymphoma (DLBCL). This study aimed to evaluate the disease prognosis using machine learning models with iterated cross validation (CV) method. A total of 122 patients with pathologically confirmed DLBCL and receiving rituximab-containing chemotherapy were enrolled. Contributions of clinical, laboratory, and metabolic imaging parameters from fluorine-18 fluorodeoxyglucose (FDG) positron emission tomography/computed tomography (PET/CT) scans to the prognosis were evaluated using five regression models, namely logistic regression, random forest, support vector classifier (SVC), deep neural network (DNN), and fuzzy neural network models. Binary classification predictions for 3-year progression free survival (PFS) and 3-year overall survival (OS) were conducted. The 10-iterated fivefold CV with shuffling process was conducted to predict the capability of learning machines. The median PFS and OS were 41.0 and 43.6 months, respectively. Two indicators were found to be independent predictors for prognosis: international prognostic index and total metabolic tumor volume (MTVsum) from FDG PET/CT. For PFS, SVC and DNN (both with accuracy 71%) have the best predictive results, of which outperformed other algorithms. For OS, the DNN has the best predictive result (accuracy 76%). Using clinical and metabolic parameters as input variables, the machine learning methods with iterated CV method add the predictive values for PFS and OS evaluation in DLBCL patients. Nature Publishing Group UK 2023-01-25 /pmc/articles/PMC9876907/ /pubmed/36697456 http://dx.doi.org/10.1038/s41598-023-28394-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Chang, Chin-Chuan Chen, Chien-Hua Hsieh, Jer-Guang Jeng, Jyh-Horng Iterated cross validation method for prediction of survival in diffuse large B-cell lymphoma for small size dataset |
title | Iterated cross validation method for prediction of survival in diffuse large B-cell lymphoma for small size dataset |
title_full | Iterated cross validation method for prediction of survival in diffuse large B-cell lymphoma for small size dataset |
title_fullStr | Iterated cross validation method for prediction of survival in diffuse large B-cell lymphoma for small size dataset |
title_full_unstemmed | Iterated cross validation method for prediction of survival in diffuse large B-cell lymphoma for small size dataset |
title_short | Iterated cross validation method for prediction of survival in diffuse large B-cell lymphoma for small size dataset |
title_sort | iterated cross validation method for prediction of survival in diffuse large b-cell lymphoma for small size dataset |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9876907/ https://www.ncbi.nlm.nih.gov/pubmed/36697456 http://dx.doi.org/10.1038/s41598-023-28394-6 |
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