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Correcting delayed reporting of COVID‐19 using the generalized‐Dirichlet‐multinomial method

The COVID‐19 pandemic has highlighted delayed reporting as a significant impediment to effective disease surveillance and decision‐making. In the absence of timely data, statistical models which account for delays can be adopted to nowcast and forecast cases or deaths. We discuss the four key source...

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Detalles Bibliográficos
Autores principales: Stoner, Oliver, Halliday, Alba, Economou, Theo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9877609/
https://www.ncbi.nlm.nih.gov/pubmed/36484382
http://dx.doi.org/10.1111/biom.13810
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author Stoner, Oliver
Halliday, Alba
Economou, Theo
author_facet Stoner, Oliver
Halliday, Alba
Economou, Theo
author_sort Stoner, Oliver
collection PubMed
description The COVID‐19 pandemic has highlighted delayed reporting as a significant impediment to effective disease surveillance and decision‐making. In the absence of timely data, statistical models which account for delays can be adopted to nowcast and forecast cases or deaths. We discuss the four key sources of systematic and random variability in available data for COVID‐19 and other diseases, and critically evaluate current state‐of‐the‐art methods with respect to appropriately separating and capturing this variability. We propose a general hierarchical approach to correcting delayed reporting of COVID‐19 and apply this to daily English hospital deaths, resulting in a flexible prediction tool which could be used to better inform pandemic decision‐making. We compare this approach to competing models with respect to theoretical flexibility and quantitative metrics from a 15‐month rolling prediction experiment imitating a realistic operational scenario. Based on consistent leads in predictive accuracy, bias, and precision, we argue that this approach is an attractive option for correcting delayed reporting of COVID‐19 and future epidemics.
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spelling pubmed-98776092023-01-26 Correcting delayed reporting of COVID‐19 using the generalized‐Dirichlet‐multinomial method Stoner, Oliver Halliday, Alba Economou, Theo Biometrics Biometric Practice The COVID‐19 pandemic has highlighted delayed reporting as a significant impediment to effective disease surveillance and decision‐making. In the absence of timely data, statistical models which account for delays can be adopted to nowcast and forecast cases or deaths. We discuss the four key sources of systematic and random variability in available data for COVID‐19 and other diseases, and critically evaluate current state‐of‐the‐art methods with respect to appropriately separating and capturing this variability. We propose a general hierarchical approach to correcting delayed reporting of COVID‐19 and apply this to daily English hospital deaths, resulting in a flexible prediction tool which could be used to better inform pandemic decision‐making. We compare this approach to competing models with respect to theoretical flexibility and quantitative metrics from a 15‐month rolling prediction experiment imitating a realistic operational scenario. Based on consistent leads in predictive accuracy, bias, and precision, we argue that this approach is an attractive option for correcting delayed reporting of COVID‐19 and future epidemics. John Wiley and Sons Inc. 2022-12-27 /pmc/articles/PMC9877609/ /pubmed/36484382 http://dx.doi.org/10.1111/biom.13810 Text en © 2022 The Authors. Biometrics published by Wiley Periodicals LLC on behalf of International Biometric Society. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Biometric Practice
Stoner, Oliver
Halliday, Alba
Economou, Theo
Correcting delayed reporting of COVID‐19 using the generalized‐Dirichlet‐multinomial method
title Correcting delayed reporting of COVID‐19 using the generalized‐Dirichlet‐multinomial method
title_full Correcting delayed reporting of COVID‐19 using the generalized‐Dirichlet‐multinomial method
title_fullStr Correcting delayed reporting of COVID‐19 using the generalized‐Dirichlet‐multinomial method
title_full_unstemmed Correcting delayed reporting of COVID‐19 using the generalized‐Dirichlet‐multinomial method
title_short Correcting delayed reporting of COVID‐19 using the generalized‐Dirichlet‐multinomial method
title_sort correcting delayed reporting of covid‐19 using the generalized‐dirichlet‐multinomial method
topic Biometric Practice
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9877609/
https://www.ncbi.nlm.nih.gov/pubmed/36484382
http://dx.doi.org/10.1111/biom.13810
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