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Conformational Features and Hydration Dynamics of Proteins in Cosolvents: A Perspective from Computational Approaches

[Image: see text] The importance of solvent in stabilizing protein structures has long been recognized. Water is the common solvent for proteins, and hydration is elemental in governing protein stability, flexibility, and function through various interactions. The addition of small organic molecules...

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Autores principales: Gazi, Rabiul, Maity, Sankar, Jana, Madhurima
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9878537/
https://www.ncbi.nlm.nih.gov/pubmed/36713749
http://dx.doi.org/10.1021/acsomega.2c08009
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author Gazi, Rabiul
Maity, Sankar
Jana, Madhurima
author_facet Gazi, Rabiul
Maity, Sankar
Jana, Madhurima
author_sort Gazi, Rabiul
collection PubMed
description [Image: see text] The importance of solvent in stabilizing protein structures has long been recognized. Water is the common solvent for proteins, and hydration is elemental in governing protein stability, flexibility, and function through various interactions. The addition of small organic molecules known as cosolvents may deploy stabilization (folding) or destabilization (unfolding) effects on native protein conformations. Despite exhaustive literature, the molecular mechanism by which cosolvents regulate protein conformations and dynamics is controversial. Specifically, the cosolvent behavior has been unpredictable with the nature and concentrations that lead to protein stabilizing/destabilizing effects as it changes in water content near the vicinity of proteins. With the massive development of computational resources, advancement of computational methods, and the availability of numerous experimental techniques, various theoretical and computational studies of proteins in a mixture of solvents have been instigated. The growing interest in such studies has been to unravel the underlying mechanism of protein folding and cosolvent/solvent–protein interactions that have significant implications in biomedical and biotechnological applications. In this mini-review, apart from the brief overview of important theories and force-field model-based cosolvent effects on proteins, we present the current state of knowledge and recent advances in the field to describe cosolvent-guided conformational features of proteins and hydration dynamics from computational approaches. The mini-review further explains the mechanistic details of protein stability in various popularly used cosolvents, including limitations of present studies and future outlooks. The counteracting effects of cosolvent on the proteins in the mixture of stabilizing and destabilizing cosolvents are also presented and discussed.
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spelling pubmed-98785372023-01-27 Conformational Features and Hydration Dynamics of Proteins in Cosolvents: A Perspective from Computational Approaches Gazi, Rabiul Maity, Sankar Jana, Madhurima ACS Omega [Image: see text] The importance of solvent in stabilizing protein structures has long been recognized. Water is the common solvent for proteins, and hydration is elemental in governing protein stability, flexibility, and function through various interactions. The addition of small organic molecules known as cosolvents may deploy stabilization (folding) or destabilization (unfolding) effects on native protein conformations. Despite exhaustive literature, the molecular mechanism by which cosolvents regulate protein conformations and dynamics is controversial. Specifically, the cosolvent behavior has been unpredictable with the nature and concentrations that lead to protein stabilizing/destabilizing effects as it changes in water content near the vicinity of proteins. With the massive development of computational resources, advancement of computational methods, and the availability of numerous experimental techniques, various theoretical and computational studies of proteins in a mixture of solvents have been instigated. The growing interest in such studies has been to unravel the underlying mechanism of protein folding and cosolvent/solvent–protein interactions that have significant implications in biomedical and biotechnological applications. In this mini-review, apart from the brief overview of important theories and force-field model-based cosolvent effects on proteins, we present the current state of knowledge and recent advances in the field to describe cosolvent-guided conformational features of proteins and hydration dynamics from computational approaches. The mini-review further explains the mechanistic details of protein stability in various popularly used cosolvents, including limitations of present studies and future outlooks. The counteracting effects of cosolvent on the proteins in the mixture of stabilizing and destabilizing cosolvents are also presented and discussed. American Chemical Society 2023-01-12 /pmc/articles/PMC9878537/ /pubmed/36713749 http://dx.doi.org/10.1021/acsomega.2c08009 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Gazi, Rabiul
Maity, Sankar
Jana, Madhurima
Conformational Features and Hydration Dynamics of Proteins in Cosolvents: A Perspective from Computational Approaches
title Conformational Features and Hydration Dynamics of Proteins in Cosolvents: A Perspective from Computational Approaches
title_full Conformational Features and Hydration Dynamics of Proteins in Cosolvents: A Perspective from Computational Approaches
title_fullStr Conformational Features and Hydration Dynamics of Proteins in Cosolvents: A Perspective from Computational Approaches
title_full_unstemmed Conformational Features and Hydration Dynamics of Proteins in Cosolvents: A Perspective from Computational Approaches
title_short Conformational Features and Hydration Dynamics of Proteins in Cosolvents: A Perspective from Computational Approaches
title_sort conformational features and hydration dynamics of proteins in cosolvents: a perspective from computational approaches
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9878537/
https://www.ncbi.nlm.nih.gov/pubmed/36713749
http://dx.doi.org/10.1021/acsomega.2c08009
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AT janamadhurima conformationalfeaturesandhydrationdynamicsofproteinsincosolventsaperspectivefromcomputationalapproaches