Cargando…

Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study

[Image: see text] Understanding the binding of chitosan oligomers to the surface of a chitin nanocrystal is important for improving the enzymatic deacetylation of chitin and for the design of chitin/chitosan composite films. Here, we study the binding of several chito-oligomers to the (100) surface...

Descripción completa

Detalles Bibliográficos
Autores principales: Hudek, Magdalena, Kubiak-Ossowska, Karina, Johnston, Karen, Ferro, Valerie A., Mulheran, Paul A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9878639/
https://www.ncbi.nlm.nih.gov/pubmed/36713729
http://dx.doi.org/10.1021/acsomega.2c07495
_version_ 1784878529812365312
author Hudek, Magdalena
Kubiak-Ossowska, Karina
Johnston, Karen
Ferro, Valerie A.
Mulheran, Paul A.
author_facet Hudek, Magdalena
Kubiak-Ossowska, Karina
Johnston, Karen
Ferro, Valerie A.
Mulheran, Paul A.
author_sort Hudek, Magdalena
collection PubMed
description [Image: see text] Understanding the binding of chitosan oligomers to the surface of a chitin nanocrystal is important for improving the enzymatic deacetylation of chitin and for the design of chitin/chitosan composite films. Here, we study the binding of several chito-oligomers to the (100) surface of an α-chitin crystal using molecular dynamics (MD), steered MD, and umbrella sampling. The convergence of the free energy was carefully considered and yielded a binding energies of −12.5 and −2 kcal mol(–1) for 6-monomer-long chitin and uncharged chitosan oligomers, respectively. We also found that the results for the umbrella sampling were consistent with the force profile from the steered MD and with classical MD simulations of the adsorption process. Our results give insight into the molecular-scale interactions, which can be helpful for the design of new chitin composite films. Furthermore, the free energy curves we present can be used to validate coarse-grained models for chitin and chitosan, which are necessary to study the self-assembly of chitin crystals due to the long time scale of the process.
format Online
Article
Text
id pubmed-9878639
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-98786392023-01-27 Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study Hudek, Magdalena Kubiak-Ossowska, Karina Johnston, Karen Ferro, Valerie A. Mulheran, Paul A. ACS Omega [Image: see text] Understanding the binding of chitosan oligomers to the surface of a chitin nanocrystal is important for improving the enzymatic deacetylation of chitin and for the design of chitin/chitosan composite films. Here, we study the binding of several chito-oligomers to the (100) surface of an α-chitin crystal using molecular dynamics (MD), steered MD, and umbrella sampling. The convergence of the free energy was carefully considered and yielded a binding energies of −12.5 and −2 kcal mol(–1) for 6-monomer-long chitin and uncharged chitosan oligomers, respectively. We also found that the results for the umbrella sampling were consistent with the force profile from the steered MD and with classical MD simulations of the adsorption process. Our results give insight into the molecular-scale interactions, which can be helpful for the design of new chitin composite films. Furthermore, the free energy curves we present can be used to validate coarse-grained models for chitin and chitosan, which are necessary to study the self-assembly of chitin crystals due to the long time scale of the process. American Chemical Society 2023-01-10 /pmc/articles/PMC9878639/ /pubmed/36713729 http://dx.doi.org/10.1021/acsomega.2c07495 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Hudek, Magdalena
Kubiak-Ossowska, Karina
Johnston, Karen
Ferro, Valerie A.
Mulheran, Paul A.
Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study
title Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study
title_full Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study
title_fullStr Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study
title_full_unstemmed Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study
title_short Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study
title_sort chitin and chitosan binding to the α-chitin crystal: a molecular dynamics study
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9878639/
https://www.ncbi.nlm.nih.gov/pubmed/36713729
http://dx.doi.org/10.1021/acsomega.2c07495
work_keys_str_mv AT hudekmagdalena chitinandchitosanbindingtotheachitincrystalamoleculardynamicsstudy
AT kubiakossowskakarina chitinandchitosanbindingtotheachitincrystalamoleculardynamicsstudy
AT johnstonkaren chitinandchitosanbindingtotheachitincrystalamoleculardynamicsstudy
AT ferrovaleriea chitinandchitosanbindingtotheachitincrystalamoleculardynamicsstudy
AT mulheranpaula chitinandchitosanbindingtotheachitincrystalamoleculardynamicsstudy