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Retrospective genomic analysis of the first Lumpy skin disease virus outbreak in China (2019)
Lumpy skin disease caused by Lumpy skin disease virus (LSDV) is a severe systemic disease affecting cattle and other ruminants. Lumpy skin disease was first reported in northwest China in August 2019 and has severely threatened the cattle breeding industry in China. However, there have been limited...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9879060/ https://www.ncbi.nlm.nih.gov/pubmed/36713885 http://dx.doi.org/10.3389/fvets.2022.1073648 |
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author | Wei, Yu-Rong Ma, Wen-Ge Wang, Ping Wang, Wen Su, Xiao-Hui Yang, Xue-Yun Mi, Xiao-Yun Wu, Jian-Yong Huang, Jiong |
author_facet | Wei, Yu-Rong Ma, Wen-Ge Wang, Ping Wang, Wen Su, Xiao-Hui Yang, Xue-Yun Mi, Xiao-Yun Wu, Jian-Yong Huang, Jiong |
author_sort | Wei, Yu-Rong |
collection | PubMed |
description | Lumpy skin disease caused by Lumpy skin disease virus (LSDV) is a severe systemic disease affecting cattle and other ruminants. Lumpy skin disease was first reported in northwest China in August 2019 and has severely threatened the cattle breeding industry in China. However, there have been limited genomic studies of LSDV from the first outbreak and its subsequent epidemics. This study aims to characterize the comparative genomic evolution of the LSDV strain from the first outbreak in China. The etiological agent was isolated in a Madin-Darby bovine kidney cell culture and subsequently identified by PCR and Sanger sequencing of six selected genes. The genome sequence was determined using Illumina sequencing and analyzed through genome alignment and phylogenetic tree. The results showed that all six genes were successfully amplified and genetically clustered into LSDV. The virus presented the highest homology to strain China/GD01/2020, which shared 100% identities among 150 open reading frames (ORFs), and 97.1–99.7% identities among additional 6 ORFs. Bayesian inference tree analysis revealed that the virus shared a common ancestor with LSDV strains from China and Vietnam. The study provides an additional genomic data for LSDV tracking and control in China and neighboring countries. |
format | Online Article Text |
id | pubmed-9879060 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98790602023-01-27 Retrospective genomic analysis of the first Lumpy skin disease virus outbreak in China (2019) Wei, Yu-Rong Ma, Wen-Ge Wang, Ping Wang, Wen Su, Xiao-Hui Yang, Xue-Yun Mi, Xiao-Yun Wu, Jian-Yong Huang, Jiong Front Vet Sci Veterinary Science Lumpy skin disease caused by Lumpy skin disease virus (LSDV) is a severe systemic disease affecting cattle and other ruminants. Lumpy skin disease was first reported in northwest China in August 2019 and has severely threatened the cattle breeding industry in China. However, there have been limited genomic studies of LSDV from the first outbreak and its subsequent epidemics. This study aims to characterize the comparative genomic evolution of the LSDV strain from the first outbreak in China. The etiological agent was isolated in a Madin-Darby bovine kidney cell culture and subsequently identified by PCR and Sanger sequencing of six selected genes. The genome sequence was determined using Illumina sequencing and analyzed through genome alignment and phylogenetic tree. The results showed that all six genes were successfully amplified and genetically clustered into LSDV. The virus presented the highest homology to strain China/GD01/2020, which shared 100% identities among 150 open reading frames (ORFs), and 97.1–99.7% identities among additional 6 ORFs. Bayesian inference tree analysis revealed that the virus shared a common ancestor with LSDV strains from China and Vietnam. The study provides an additional genomic data for LSDV tracking and control in China and neighboring countries. Frontiers Media S.A. 2023-01-12 /pmc/articles/PMC9879060/ /pubmed/36713885 http://dx.doi.org/10.3389/fvets.2022.1073648 Text en Copyright © 2023 Wei, Ma, Wang, Wang, Su, Yang, Mi, Wu and Huang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Veterinary Science Wei, Yu-Rong Ma, Wen-Ge Wang, Ping Wang, Wen Su, Xiao-Hui Yang, Xue-Yun Mi, Xiao-Yun Wu, Jian-Yong Huang, Jiong Retrospective genomic analysis of the first Lumpy skin disease virus outbreak in China (2019) |
title | Retrospective genomic analysis of the first Lumpy skin disease virus outbreak in China (2019) |
title_full | Retrospective genomic analysis of the first Lumpy skin disease virus outbreak in China (2019) |
title_fullStr | Retrospective genomic analysis of the first Lumpy skin disease virus outbreak in China (2019) |
title_full_unstemmed | Retrospective genomic analysis of the first Lumpy skin disease virus outbreak in China (2019) |
title_short | Retrospective genomic analysis of the first Lumpy skin disease virus outbreak in China (2019) |
title_sort | retrospective genomic analysis of the first lumpy skin disease virus outbreak in china (2019) |
topic | Veterinary Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9879060/ https://www.ncbi.nlm.nih.gov/pubmed/36713885 http://dx.doi.org/10.3389/fvets.2022.1073648 |
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