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Prognostic value of NOX2 as a potential biomarker for lung adenocarcinoma using TCGA and clinical validation
Lung adenocarcinoma (LUAD) is associated with high morbidity and mortality; therefore, effective biomarkers are essential. In recent years, a rapid increase in the efficiency of high-throughput sequencing technologies and the continuous improvement of comprehensive online databases have facilitated...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9879073/ https://www.ncbi.nlm.nih.gov/pubmed/36633128 http://dx.doi.org/10.3892/mmr.2023.12935 |
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author | Liu, Yingjie Han, Di Ma, Qihui Zheng, Yuanhang Lin, Yi Yang, Chunqing Yang, Lun |
author_facet | Liu, Yingjie Han, Di Ma, Qihui Zheng, Yuanhang Lin, Yi Yang, Chunqing Yang, Lun |
author_sort | Liu, Yingjie |
collection | PubMed |
description | Lung adenocarcinoma (LUAD) is associated with high morbidity and mortality; therefore, effective biomarkers are essential. In recent years, a rapid increase in the efficiency of high-throughput sequencing technologies and the continuous improvement of comprehensive online databases have facilitated the study of the genomic changes that affect tumor progression, including the identification of tumor biomarkers. Therefore, the identification of genes that may affect the progression and prognosis of LUAD is necessary. In the present study, the CIBERSORT and ESTIMATE bioinformatics packages were used to evaluate data from The Cancer Genome Atlas, including assessment of the proportion of tumor-infiltrating immune cells in the tumor microenvironment, Cox regression analysis of differentially expressed genes and cross analysis of protein-protein interaction networks. Myeloid cell NADPH oxidase isoform 2 (NOX2), an indispensable gene in the immune system, was demonstrated to serve a vital role in LUAD pathogenesis. Western blotting and immunohistochemistry confirmed that, at the protein level, NOX2 expression was increased in normal cells compared with cancer cells. Furthermore, reverse transcription-quantitative PCR results at the mRNA level were consistent with these results, which confirmed that the abundance of NOX2 was significantly reduced in LUAD patients. NOX2 may be used as a novel marker and an independent prognostic indicator of LUAD. Its potential function was enriched in tumor immune and metabolic signaling pathways, which could provide clues for the study of the signaling pathways and molecular networks related to the disease progression of LUAD, which would be helpful for the assessment of prognosis in the clinical setting. |
format | Online Article Text |
id | pubmed-9879073 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-98790732023-02-08 Prognostic value of NOX2 as a potential biomarker for lung adenocarcinoma using TCGA and clinical validation Liu, Yingjie Han, Di Ma, Qihui Zheng, Yuanhang Lin, Yi Yang, Chunqing Yang, Lun Mol Med Rep Articles Lung adenocarcinoma (LUAD) is associated with high morbidity and mortality; therefore, effective biomarkers are essential. In recent years, a rapid increase in the efficiency of high-throughput sequencing technologies and the continuous improvement of comprehensive online databases have facilitated the study of the genomic changes that affect tumor progression, including the identification of tumor biomarkers. Therefore, the identification of genes that may affect the progression and prognosis of LUAD is necessary. In the present study, the CIBERSORT and ESTIMATE bioinformatics packages were used to evaluate data from The Cancer Genome Atlas, including assessment of the proportion of tumor-infiltrating immune cells in the tumor microenvironment, Cox regression analysis of differentially expressed genes and cross analysis of protein-protein interaction networks. Myeloid cell NADPH oxidase isoform 2 (NOX2), an indispensable gene in the immune system, was demonstrated to serve a vital role in LUAD pathogenesis. Western blotting and immunohistochemistry confirmed that, at the protein level, NOX2 expression was increased in normal cells compared with cancer cells. Furthermore, reverse transcription-quantitative PCR results at the mRNA level were consistent with these results, which confirmed that the abundance of NOX2 was significantly reduced in LUAD patients. NOX2 may be used as a novel marker and an independent prognostic indicator of LUAD. Its potential function was enriched in tumor immune and metabolic signaling pathways, which could provide clues for the study of the signaling pathways and molecular networks related to the disease progression of LUAD, which would be helpful for the assessment of prognosis in the clinical setting. D.A. Spandidos 2023-01-09 /pmc/articles/PMC9879073/ /pubmed/36633128 http://dx.doi.org/10.3892/mmr.2023.12935 Text en Copyright: © Liu et al. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Liu, Yingjie Han, Di Ma, Qihui Zheng, Yuanhang Lin, Yi Yang, Chunqing Yang, Lun Prognostic value of NOX2 as a potential biomarker for lung adenocarcinoma using TCGA and clinical validation |
title | Prognostic value of NOX2 as a potential biomarker for lung adenocarcinoma using TCGA and clinical validation |
title_full | Prognostic value of NOX2 as a potential biomarker for lung adenocarcinoma using TCGA and clinical validation |
title_fullStr | Prognostic value of NOX2 as a potential biomarker for lung adenocarcinoma using TCGA and clinical validation |
title_full_unstemmed | Prognostic value of NOX2 as a potential biomarker for lung adenocarcinoma using TCGA and clinical validation |
title_short | Prognostic value of NOX2 as a potential biomarker for lung adenocarcinoma using TCGA and clinical validation |
title_sort | prognostic value of nox2 as a potential biomarker for lung adenocarcinoma using tcga and clinical validation |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9879073/ https://www.ncbi.nlm.nih.gov/pubmed/36633128 http://dx.doi.org/10.3892/mmr.2023.12935 |
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