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Development and validation of a novel ferroptosis‑related lncRNA prognostic signature for pancreatic adenocarcinoma

Long non-coding RNAs (lncRNAs) serve a pivotal role in the regulation of cancer cell ferroptosis. However, the prognostic value of ferroptosis-related lncRNAs in pancreatic adenocarcinoma (PAAD) largely remains unclear. We aimed at constructing a lncRNA-based signature to improve the prognosis predi...

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Autores principales: Li, Jian, Li, Wenhua, Wang, Huaizhi, Ni, Bing, Liu, Yongkang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9879080/
https://www.ncbi.nlm.nih.gov/pubmed/36660936
http://dx.doi.org/10.3892/mmr.2023.12943
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author Li, Jian
Li, Wenhua
Wang, Huaizhi
Ni, Bing
Liu, Yongkang
author_facet Li, Jian
Li, Wenhua
Wang, Huaizhi
Ni, Bing
Liu, Yongkang
author_sort Li, Jian
collection PubMed
description Long non-coding RNAs (lncRNAs) serve a pivotal role in the regulation of cancer cell ferroptosis. However, the prognostic value of ferroptosis-related lncRNAs in pancreatic adenocarcinoma (PAAD) largely remains unclear. We aimed at constructing a lncRNA-based signature to improve the prognosis prediction of PAAD. In the present study, the transcriptome profiling data and clinical information of patients with PAAD were obtained from The Cancer Genome Atlas (TCGA) and International Cancer Gene Consortium (ICGC) databases. Univariate Cox regression analysis of the TCGA cohort demonstrated that 26 ferroptosis-related lncRNAs had significant prognostic value for PAAD (all P<0.01). Least absolute shrinkage and selection operator regression and multivariate Cox proportional hazards regression analyses were performed to construct a prognostic ferroptosis-related lncRNA signature (FRLS) comprising nine ferroptosis-related lncRNAs. The efficacy of this FRLS was verified in the training (TCGA) and validation (ICGC) cohorts. Based on the risk model, high risk scores were significantly correlated with poor overall survival (OS) (hazard ratio, 1.314; 95% confidence interval, 1.218-1.418; P<0.001). The receiver operating characteristic curves and principal component analysis further demonstrated the robust prognostic ability of the FRLS. Furthermore, a nomogram with favorable predictive efficacy for the prediction of OS was constructed based on the FRLS and clinical features. Gene set enrichment analysis demonstrated that the genes in the FRLS participated in a number of cancer-associated immunoregulatory pathways. Importantly, it was demonstrated that immune infiltration and response to cancer immunotherapy differed significantly between the high and low-risk groups according to the FRLS. In conclusion, the risk signature based on the FRLS has potential for the clinical prediction of prognosis and immunotherapy response in patients with PAAD.
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spelling pubmed-98790802023-02-08 Development and validation of a novel ferroptosis‑related lncRNA prognostic signature for pancreatic adenocarcinoma Li, Jian Li, Wenhua Wang, Huaizhi Ni, Bing Liu, Yongkang Mol Med Rep Articles Long non-coding RNAs (lncRNAs) serve a pivotal role in the regulation of cancer cell ferroptosis. However, the prognostic value of ferroptosis-related lncRNAs in pancreatic adenocarcinoma (PAAD) largely remains unclear. We aimed at constructing a lncRNA-based signature to improve the prognosis prediction of PAAD. In the present study, the transcriptome profiling data and clinical information of patients with PAAD were obtained from The Cancer Genome Atlas (TCGA) and International Cancer Gene Consortium (ICGC) databases. Univariate Cox regression analysis of the TCGA cohort demonstrated that 26 ferroptosis-related lncRNAs had significant prognostic value for PAAD (all P<0.01). Least absolute shrinkage and selection operator regression and multivariate Cox proportional hazards regression analyses were performed to construct a prognostic ferroptosis-related lncRNA signature (FRLS) comprising nine ferroptosis-related lncRNAs. The efficacy of this FRLS was verified in the training (TCGA) and validation (ICGC) cohorts. Based on the risk model, high risk scores were significantly correlated with poor overall survival (OS) (hazard ratio, 1.314; 95% confidence interval, 1.218-1.418; P<0.001). The receiver operating characteristic curves and principal component analysis further demonstrated the robust prognostic ability of the FRLS. Furthermore, a nomogram with favorable predictive efficacy for the prediction of OS was constructed based on the FRLS and clinical features. Gene set enrichment analysis demonstrated that the genes in the FRLS participated in a number of cancer-associated immunoregulatory pathways. Importantly, it was demonstrated that immune infiltration and response to cancer immunotherapy differed significantly between the high and low-risk groups according to the FRLS. In conclusion, the risk signature based on the FRLS has potential for the clinical prediction of prognosis and immunotherapy response in patients with PAAD. D.A. Spandidos 2023-01-18 /pmc/articles/PMC9879080/ /pubmed/36660936 http://dx.doi.org/10.3892/mmr.2023.12943 Text en Copyright: © Li et al. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Li, Jian
Li, Wenhua
Wang, Huaizhi
Ni, Bing
Liu, Yongkang
Development and validation of a novel ferroptosis‑related lncRNA prognostic signature for pancreatic adenocarcinoma
title Development and validation of a novel ferroptosis‑related lncRNA prognostic signature for pancreatic adenocarcinoma
title_full Development and validation of a novel ferroptosis‑related lncRNA prognostic signature for pancreatic adenocarcinoma
title_fullStr Development and validation of a novel ferroptosis‑related lncRNA prognostic signature for pancreatic adenocarcinoma
title_full_unstemmed Development and validation of a novel ferroptosis‑related lncRNA prognostic signature for pancreatic adenocarcinoma
title_short Development and validation of a novel ferroptosis‑related lncRNA prognostic signature for pancreatic adenocarcinoma
title_sort development and validation of a novel ferroptosis‑related lncrna prognostic signature for pancreatic adenocarcinoma
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9879080/
https://www.ncbi.nlm.nih.gov/pubmed/36660936
http://dx.doi.org/10.3892/mmr.2023.12943
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