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Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques

Dengue fever is a vector-borne disease affecting millions yearly, mostly in tropical and subtropical countries. Driven mainly by social and environmental factors, dengue incidence and geographical expansion have increased in recent decades. Therefore, understanding how climate variables drive dengue...

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Autores principales: Barboza, Luis A., Chou-Chen, Shu-Wei, Vásquez, Paola, García, Yury E., Calvo, Juan G., Hidalgo, Hugo G., Sanchez, Fabio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9879398/
https://www.ncbi.nlm.nih.gov/pubmed/36638136
http://dx.doi.org/10.1371/journal.pntd.0011047
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author Barboza, Luis A.
Chou-Chen, Shu-Wei
Vásquez, Paola
García, Yury E.
Calvo, Juan G.
Hidalgo, Hugo G.
Sanchez, Fabio
author_facet Barboza, Luis A.
Chou-Chen, Shu-Wei
Vásquez, Paola
García, Yury E.
Calvo, Juan G.
Hidalgo, Hugo G.
Sanchez, Fabio
author_sort Barboza, Luis A.
collection PubMed
description Dengue fever is a vector-borne disease affecting millions yearly, mostly in tropical and subtropical countries. Driven mainly by social and environmental factors, dengue incidence and geographical expansion have increased in recent decades. Therefore, understanding how climate variables drive dengue outbreaks is challenging and a problem of interest for decision-makers that could aid in improving surveillance and resource allocation. Here, we explore the effect of climate variables on relative dengue risk in 32 cantons of interest for public health authorities in Costa Rica. Relative dengue risk is forecast using a Generalized Additive Model for location, scale, and shape and a Random Forest approach. Models use a training period from 2000 to 2020 and predicted climatic variables obtained with a vector auto-regressive model. Results show reliable projections, and climate variables predictions allow for a prospective instead of a retrospective study.
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spelling pubmed-98793982023-01-27 Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques Barboza, Luis A. Chou-Chen, Shu-Wei Vásquez, Paola García, Yury E. Calvo, Juan G. Hidalgo, Hugo G. Sanchez, Fabio PLoS Negl Trop Dis Research Article Dengue fever is a vector-borne disease affecting millions yearly, mostly in tropical and subtropical countries. Driven mainly by social and environmental factors, dengue incidence and geographical expansion have increased in recent decades. Therefore, understanding how climate variables drive dengue outbreaks is challenging and a problem of interest for decision-makers that could aid in improving surveillance and resource allocation. Here, we explore the effect of climate variables on relative dengue risk in 32 cantons of interest for public health authorities in Costa Rica. Relative dengue risk is forecast using a Generalized Additive Model for location, scale, and shape and a Random Forest approach. Models use a training period from 2000 to 2020 and predicted climatic variables obtained with a vector auto-regressive model. Results show reliable projections, and climate variables predictions allow for a prospective instead of a retrospective study. Public Library of Science 2023-01-13 /pmc/articles/PMC9879398/ /pubmed/36638136 http://dx.doi.org/10.1371/journal.pntd.0011047 Text en © 2023 Barboza et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Barboza, Luis A.
Chou-Chen, Shu-Wei
Vásquez, Paola
García, Yury E.
Calvo, Juan G.
Hidalgo, Hugo G.
Sanchez, Fabio
Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques
title Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques
title_full Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques
title_fullStr Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques
title_full_unstemmed Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques
title_short Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques
title_sort assessing dengue fever risk in costa rica by using climate variables and machine learning techniques
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9879398/
https://www.ncbi.nlm.nih.gov/pubmed/36638136
http://dx.doi.org/10.1371/journal.pntd.0011047
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