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Polyribosomes of circular topology are prevalent in mammalian cells

Polyribosomes, the groups of ribosomes simultaneously translating a single mRNA molecule, are very common in both, prokaryotic and eukaryotic cells. Even in early EM studies, polyribosomes have been shown to possess various spatial conformations, including a ring-shaped configuration which was consi...

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Autores principales: Baymukhametov, Timur N, Lyabin, Dmitry N, Chesnokov, Yury M, Sorokin, Ivan I, Pechnikova, Evgeniya V, Vasiliev, Alexander L, Afonina, Zhanna A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9881139/
https://www.ncbi.nlm.nih.gov/pubmed/36583341
http://dx.doi.org/10.1093/nar/gkac1208
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author Baymukhametov, Timur N
Lyabin, Dmitry N
Chesnokov, Yury M
Sorokin, Ivan I
Pechnikova, Evgeniya V
Vasiliev, Alexander L
Afonina, Zhanna A
author_facet Baymukhametov, Timur N
Lyabin, Dmitry N
Chesnokov, Yury M
Sorokin, Ivan I
Pechnikova, Evgeniya V
Vasiliev, Alexander L
Afonina, Zhanna A
author_sort Baymukhametov, Timur N
collection PubMed
description Polyribosomes, the groups of ribosomes simultaneously translating a single mRNA molecule, are very common in both, prokaryotic and eukaryotic cells. Even in early EM studies, polyribosomes have been shown to possess various spatial conformations, including a ring-shaped configuration which was considered to be functionally important. However, a recent in situ cryo-ET analysis of predominant regular inter-ribosome contacts did not confirm the abundance of ring-shaped polyribosomes in a cell cytoplasm. To address this discrepancy, here we analyzed the cryo-ET structure of polyribosomes in diluted lysates of HeLa cells. It was shown that the vast majority of the ribosomes were combined into polysomes and were proven to be translationally active. Tomogram analysis revealed that circular polyribosomes are indeed very common in the cytoplasm, but they mostly possess pseudo-regular structures without specific inter-ribosomal contacts. Although the size of polyribosomes varied widely, most circular polysomes were relatively small in size (4–8 ribosomes). Our results confirm the recent data that it is cellular mRNAs with short ORF that most commonly form circular structures providing an enhancement of translation.
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spelling pubmed-98811392023-01-31 Polyribosomes of circular topology are prevalent in mammalian cells Baymukhametov, Timur N Lyabin, Dmitry N Chesnokov, Yury M Sorokin, Ivan I Pechnikova, Evgeniya V Vasiliev, Alexander L Afonina, Zhanna A Nucleic Acids Res Structural Biology Polyribosomes, the groups of ribosomes simultaneously translating a single mRNA molecule, are very common in both, prokaryotic and eukaryotic cells. Even in early EM studies, polyribosomes have been shown to possess various spatial conformations, including a ring-shaped configuration which was considered to be functionally important. However, a recent in situ cryo-ET analysis of predominant regular inter-ribosome contacts did not confirm the abundance of ring-shaped polyribosomes in a cell cytoplasm. To address this discrepancy, here we analyzed the cryo-ET structure of polyribosomes in diluted lysates of HeLa cells. It was shown that the vast majority of the ribosomes were combined into polysomes and were proven to be translationally active. Tomogram analysis revealed that circular polyribosomes are indeed very common in the cytoplasm, but they mostly possess pseudo-regular structures without specific inter-ribosomal contacts. Although the size of polyribosomes varied widely, most circular polysomes were relatively small in size (4–8 ribosomes). Our results confirm the recent data that it is cellular mRNAs with short ORF that most commonly form circular structures providing an enhancement of translation. Oxford University Press 2022-12-30 /pmc/articles/PMC9881139/ /pubmed/36583341 http://dx.doi.org/10.1093/nar/gkac1208 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Structural Biology
Baymukhametov, Timur N
Lyabin, Dmitry N
Chesnokov, Yury M
Sorokin, Ivan I
Pechnikova, Evgeniya V
Vasiliev, Alexander L
Afonina, Zhanna A
Polyribosomes of circular topology are prevalent in mammalian cells
title Polyribosomes of circular topology are prevalent in mammalian cells
title_full Polyribosomes of circular topology are prevalent in mammalian cells
title_fullStr Polyribosomes of circular topology are prevalent in mammalian cells
title_full_unstemmed Polyribosomes of circular topology are prevalent in mammalian cells
title_short Polyribosomes of circular topology are prevalent in mammalian cells
title_sort polyribosomes of circular topology are prevalent in mammalian cells
topic Structural Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9881139/
https://www.ncbi.nlm.nih.gov/pubmed/36583341
http://dx.doi.org/10.1093/nar/gkac1208
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