Cargando…
Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
Alternative splicing (AS) is an important mechanism in the development of many cancers, as novel or aberrant AS patterns play an important role as an independent onco-driver. In addition, cancer-specific AS is potentially an effective target of personalized cancer therapeutics. However, detecting AS...
Autores principales: | Orabi, Baraa, Xie, Ning, McConeghy, Brian, Dong, Xuesen, Chauve, Cedric, Hach, Faraz |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9881145/ https://www.ncbi.nlm.nih.gov/pubmed/36478271 http://dx.doi.org/10.1093/nar/gkac1112 |
Ejemplares similares
-
Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA
por: Gawroński, Alexander R, et al.
Publicado: (2019) -
Fast and accurate matching of cellular barcodes across short-reads and long-reads of single-cell RNA-seq experiments
por: Ebrahimi, Ghazal, et al.
Publicado: (2022) -
EASI—enrichment of alternatively spliced isoforms
por: Venables, Julian P., et al.
Publicado: (2006) -
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
por: Wang, Kai, et al.
Publicado: (2010) -
Information transduction capacity reduces the uncertainties in annotation-free isoform discovery and quantification
por: Deng, Yue, et al.
Publicado: (2017)