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Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death

[Image: see text] Temperature variations have a big impact on bacterial metabolism and death, yet an exhaustive molecular picture of these processes is still missing. For instance, whether thermal death is determined by the deterioration of the whole or a specific part of the proteome is hotly debat...

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Autores principales: Di Bari, Daniele, Timr, Stepan, Guiral, Marianne, Giudici-Orticoni, Marie-Thérèse, Seydel, Tilo, Beck, Christian, Petrillo, Caterina, Derreumaux, Philippe, Melchionna, Simone, Sterpone, Fabio, Peters, Judith, Paciaroni, Alessandro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9881203/
https://www.ncbi.nlm.nih.gov/pubmed/36712493
http://dx.doi.org/10.1021/acscentsci.2c01078
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author Di Bari, Daniele
Timr, Stepan
Guiral, Marianne
Giudici-Orticoni, Marie-Thérèse
Seydel, Tilo
Beck, Christian
Petrillo, Caterina
Derreumaux, Philippe
Melchionna, Simone
Sterpone, Fabio
Peters, Judith
Paciaroni, Alessandro
author_facet Di Bari, Daniele
Timr, Stepan
Guiral, Marianne
Giudici-Orticoni, Marie-Thérèse
Seydel, Tilo
Beck, Christian
Petrillo, Caterina
Derreumaux, Philippe
Melchionna, Simone
Sterpone, Fabio
Peters, Judith
Paciaroni, Alessandro
author_sort Di Bari, Daniele
collection PubMed
description [Image: see text] Temperature variations have a big impact on bacterial metabolism and death, yet an exhaustive molecular picture of these processes is still missing. For instance, whether thermal death is determined by the deterioration of the whole or a specific part of the proteome is hotly debated. Here, by monitoring the proteome dynamics of E. coli, we clearly show that only a minor fraction of the proteome unfolds at the cell death. First, we prove that the dynamical state of the E. coli proteome is an excellent proxy for temperature-dependent bacterial metabolism and death. The proteome diffusive dynamics peaks at about the bacterial optimal growth temperature, then a dramatic dynamical slowdown is observed that starts just below the cell’s death temperature. Next, we show that this slowdown is caused by the unfolding of just a small fraction of proteins that establish an entangling interprotein network, dominated by hydrophobic interactions, across the cytoplasm. Finally, the deduced progress of the proteome unfolding and its diffusive dynamics are both key to correctly reproduce the E. coli growth rate.
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spelling pubmed-98812032023-01-28 Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death Di Bari, Daniele Timr, Stepan Guiral, Marianne Giudici-Orticoni, Marie-Thérèse Seydel, Tilo Beck, Christian Petrillo, Caterina Derreumaux, Philippe Melchionna, Simone Sterpone, Fabio Peters, Judith Paciaroni, Alessandro ACS Cent Sci [Image: see text] Temperature variations have a big impact on bacterial metabolism and death, yet an exhaustive molecular picture of these processes is still missing. For instance, whether thermal death is determined by the deterioration of the whole or a specific part of the proteome is hotly debated. Here, by monitoring the proteome dynamics of E. coli, we clearly show that only a minor fraction of the proteome unfolds at the cell death. First, we prove that the dynamical state of the E. coli proteome is an excellent proxy for temperature-dependent bacterial metabolism and death. The proteome diffusive dynamics peaks at about the bacterial optimal growth temperature, then a dramatic dynamical slowdown is observed that starts just below the cell’s death temperature. Next, we show that this slowdown is caused by the unfolding of just a small fraction of proteins that establish an entangling interprotein network, dominated by hydrophobic interactions, across the cytoplasm. Finally, the deduced progress of the proteome unfolding and its diffusive dynamics are both key to correctly reproduce the E. coli growth rate. American Chemical Society 2023-01-09 /pmc/articles/PMC9881203/ /pubmed/36712493 http://dx.doi.org/10.1021/acscentsci.2c01078 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Di Bari, Daniele
Timr, Stepan
Guiral, Marianne
Giudici-Orticoni, Marie-Thérèse
Seydel, Tilo
Beck, Christian
Petrillo, Caterina
Derreumaux, Philippe
Melchionna, Simone
Sterpone, Fabio
Peters, Judith
Paciaroni, Alessandro
Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death
title Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death
title_full Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death
title_fullStr Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death
title_full_unstemmed Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death
title_short Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death
title_sort diffusive dynamics of bacterial proteome as a proxy of cell death
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9881203/
https://www.ncbi.nlm.nih.gov/pubmed/36712493
http://dx.doi.org/10.1021/acscentsci.2c01078
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