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Applying joint graph embedding to study Alzheimer’s neurodegeneration patterns in volumetric data
Neurodegeneration measured through volumetry in MRI is recognized as a potential Alzheimer’s Disease (AD) biomarker, but its utility is limited by lack of specificity. Quantifying spatial patterns of neurodegeneration on a whole brain scale rather than locally may help address this. In this work, we...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882116/ https://www.ncbi.nlm.nih.gov/pubmed/36712104 http://dx.doi.org/10.1101/2023.01.11.523671 |
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author | He, Rosemary Tward, Daniel |
author_facet | He, Rosemary Tward, Daniel |
author_sort | He, Rosemary |
collection | PubMed |
description | Neurodegeneration measured through volumetry in MRI is recognized as a potential Alzheimer’s Disease (AD) biomarker, but its utility is limited by lack of specificity. Quantifying spatial patterns of neurodegeneration on a whole brain scale rather than locally may help address this. In this work, we turn to network based analyses and extend a graph embedding algorithm to study morphometric connectivity from volume-change correlations measured with structural MRI on the timescale of years. We model our data with the multiple random eigengraphs framework, as well as modify and implement a multigraph embedding algorithm proposed earlier to estimate a low dimensional embedding of the networks. Our version of the algorithm guarantees meaningful finite-sample results and estimates maximum likelihood edge probabilities from population-specific network modes and subject-specific loadings. Furthermore, we propose and implement a novel statistical testing procedure to analyze group differences after accounting for confounders and locate significant structures during AD neurodegeneration. Family-wise error rate is controlled at 5% using permutation testing on the maximum statistic. We show that results from our analysis reveal networks dominated by known structures associated to AD neurodegeneration, indicating the framework has promise for studying AD. Furthermore, we find network-structure tuples that are not found with traditional methods in the field. |
format | Online Article Text |
id | pubmed-9882116 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-98821162023-01-28 Applying joint graph embedding to study Alzheimer’s neurodegeneration patterns in volumetric data He, Rosemary Tward, Daniel bioRxiv Article Neurodegeneration measured through volumetry in MRI is recognized as a potential Alzheimer’s Disease (AD) biomarker, but its utility is limited by lack of specificity. Quantifying spatial patterns of neurodegeneration on a whole brain scale rather than locally may help address this. In this work, we turn to network based analyses and extend a graph embedding algorithm to study morphometric connectivity from volume-change correlations measured with structural MRI on the timescale of years. We model our data with the multiple random eigengraphs framework, as well as modify and implement a multigraph embedding algorithm proposed earlier to estimate a low dimensional embedding of the networks. Our version of the algorithm guarantees meaningful finite-sample results and estimates maximum likelihood edge probabilities from population-specific network modes and subject-specific loadings. Furthermore, we propose and implement a novel statistical testing procedure to analyze group differences after accounting for confounders and locate significant structures during AD neurodegeneration. Family-wise error rate is controlled at 5% using permutation testing on the maximum statistic. We show that results from our analysis reveal networks dominated by known structures associated to AD neurodegeneration, indicating the framework has promise for studying AD. Furthermore, we find network-structure tuples that are not found with traditional methods in the field. Cold Spring Harbor Laboratory 2023-01-30 /pmc/articles/PMC9882116/ /pubmed/36712104 http://dx.doi.org/10.1101/2023.01.11.523671 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article He, Rosemary Tward, Daniel Applying joint graph embedding to study Alzheimer’s neurodegeneration patterns in volumetric data |
title | Applying joint graph embedding to study Alzheimer’s neurodegeneration patterns in volumetric data |
title_full | Applying joint graph embedding to study Alzheimer’s neurodegeneration patterns in volumetric data |
title_fullStr | Applying joint graph embedding to study Alzheimer’s neurodegeneration patterns in volumetric data |
title_full_unstemmed | Applying joint graph embedding to study Alzheimer’s neurodegeneration patterns in volumetric data |
title_short | Applying joint graph embedding to study Alzheimer’s neurodegeneration patterns in volumetric data |
title_sort | applying joint graph embedding to study alzheimer’s neurodegeneration patterns in volumetric data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882116/ https://www.ncbi.nlm.nih.gov/pubmed/36712104 http://dx.doi.org/10.1101/2023.01.11.523671 |
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