Cargando…

Cost-effective DNA methylation profiling by FML-seq

Mostrar otras versiones (1)

Current methods for profiling DNA methylation require costly reagents, sequencing, or labor time. We introduce FML-seq, a sequencing library protocol that greatly reduces all these costs. Relative to other techniques tested on the same human cell lines, FML-seq produces similar measurements of absol...

Descripción completa

Detalles Bibliográficos
Autores principales:	Foley, Joseph W., Zhu, Shirley X., West, Robert B.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882132/ https://www.ncbi.nlm.nih.gov/pubmed/36711549 http://dx.doi.org/10.1101/2023.01.13.523849

Ejemplares similares

Cost-effective DNA methylation profiling by FML-seq
por: Foley, Joseph W, et al.
Publicado: (2023)

Effective immunotherapy against canine visceral leishmaniasis with the FML-vaccine
por: Borja-Cabrera, Gulnara Patricia, et al.
Publicado: (2004)

The ATPase activity of Fml1 is essential for its roles in homologous recombination and DNA repair
por: Nandi, Saikat, et al.
Publicado: (2012)

Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ
por: Foley, Joseph W., et al.
Publicado: (2019)

The Correlation of LVI Parameters and CAI Behaviour in Aluminium-Based FML
por: Podolak, Piotr, et al.
Publicado: (2023)

ACLMHA and FML: A brain-inspired kinship verification framework
por: Li, Chen, et al.
Publicado: (2022)

The Fml1-MHF complex suppresses inter-fork strand annealing in fission yeast
por: Wong, Io Nam, et al.
Publicado: (2019)

Technological Improvements on FML in the Chianti Classico Wine Production: Co-Inoculation or Sequential Inoculation?
por: Bianchi, Alessandro, et al.
Publicado: (2022)

FML/QuilA-Vaccinated Dogs Naturally Infected with Leishmania infantum: Serum Cytokines, Clinicopathological Profile, and Parasitological Parameters
por: Almeida, Gregório Guilherme, et al.
Publicado: (2021)

OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations
por: Mularoni, Loris, et al.
Publicado: (2016)

The FANCM Ortholog Fml1 Promotes Recombination at Stalled Replication Forks and Limits Crossing Over during DNA Double-Strand Break Repair
por: Sun, Weili, et al.
Publicado: (2008)

Structure-based discovery of glycomimetic FmlH ligands as inhibitors of bacterial adhesion during urinary tract infection
por: Kalas, Vasilios, et al.
Publicado: (2018)

Three-Dimensional Smooth Particle Hydrodynamics Modeling and Experimental Analysis of the Ballistic Performance of Steel-Based FML Targets
por: Kubit, Andrzej, et al.
Publicado: (2022)

3′-End Sequencing for Expression Quantification (3SEQ) from Archival Tumor Samples
por: Beck, Andrew H., et al.
Publicado: (2010)

methyl-ATAC-seq measures DNA methylation at accessible chromatin
por: Spektor, Roman, et al.
Publicado: (2019)

EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation
por: Lhoumaud, Priscillia, et al.
Publicado: (2019)

Epigenetic alterations in TRAMP mice: epigenome DNA methylation profiling using MeDIP-seq
por: Li, Wenji, et al.
Publicado: (2018)

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
por: Clark, Stephen J., et al.
Publicado: (2018)

High-throughput and affordable genome-wide methylation profiling of circulating cell-free DNA by methylated DNA sequencing (MeD-seq) of LpnPI digested fragments
por: Deger, Teoman, et al.
Publicado: (2021)

Genome-wide DNA methylation profiling with MeDIP-seq using archived dried blood spots
por: Staunstrup, Nicklas H., et al.
Publicado: (2016)

MIRA-seq for DNA methylation analysis of CpG islands
por: Jung, Marc, et al.
Publicado: (2015)

DNA methylation-based chromatin compartments and ChIP-seq profiles reveal transcriptional drivers of prostate carcinogenesis
por: Simmonds, Poppy, et al.
Publicado: (2017)

Genome-wide DNA methylation profiling in human breast tissue by Illumina TruSeq methyl capture EPIC sequencing and infinium methylationEPIC beadchip microarray
por: Lin, Nan, et al.
Publicado: (2020)

Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
por: Liu, Yaping, et al.
Publicado: (2012)

Genome-wide analysis of cell-Free DNA methylation profiling with MeDIP-seq identified potential biomarkers for colorectal cancer
por: Zhang, Xin, et al.
Publicado: (2022)

Robust single-cell DNA methylome profiling with snmC-seq2
por: Luo, Chongyuan, et al.
Publicado: (2018)

Protocol for scChaRM-seq: Simultaneous profiling of gene expression, DNA methylation, and chromatin accessibility in single cells
por: Yan, Rui, et al.
Publicado: (2021)

Identification of DNA methylation-regulated differentially expressed genes in RA by integrated analysis of DNA methylation and RNA-Seq data
por: Zhang, Runrun, et al.
Publicado: (2022)

A cost-effective approach to DNA methylation detection by Methyl Sensitive DArT sequencing
por: Pereira, Wendell Jacinto, et al.
Publicado: (2020)

DNA Methylation Analysis in the Intestinal Epithelium—Effect of Cell Separation on Gene Expression and Methylation Profile
por: Jenke, Andreas C., et al.
Publicado: (2013)

Risk factors for inhibitors in hemophilia A based on RNA‐seq and DNA methylation
por: Liu, Wei, et al.
Publicado: (2022)

A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
por: Hasegawa, Keita, et al.
Publicado: (2023)

3’Pool-seq: an optimized cost-efficient and scalable method of whole-transcriptome gene expression profiling
por: Sholder, Gabriel, et al.
Publicado: (2020)

Integrated single-cell RNA-seq and DNA methylation reveal the effects of air pollution in patients with recurrent spontaneous abortion
por: Zhu, Weiqiang, et al.
Publicado: (2022)

DNA methylation profiling analysis identifies a DNA methylation signature for predicting prognosis and recurrence of lung adenocarcinoma
por: Wang, Rui, et al.
Publicado: (2019)

An integrative analysis of DNA methylation and RNA-Seq data for human heart, kidney and liver
por: Xie, Linglin, et al.
Publicado: (2011)

Sarcoma classification by DNA methylation profiling
por: Koelsche, Christian, et al.
Publicado: (2021)

CUT&Tag-BS for simultaneous profiling of histone modification and DNA methylation with high efficiency and low cost
por: Li, Ruifang, et al.
Publicado: (2021)

Methylation-level inferences and detection of differential methylation with MeDIP-seq data
por: Zhou, Yan, et al.
Publicado: (2018)

Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer
por: Guo, Xiangqian, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_fnr8b9bp5shlmlrv5u135l6gi4