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Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium

Investigators in neuroscience have turned to Big Data to address replication and reliability issues by increasing sample sizes, statistical power, and representativeness of data. These efforts unveil new questions about integrating data arising from distinct sources and instruments. We focus on the...

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Autores principales: Kennedy, Eamonn, Vadlamani, Shashank, Lindsey, Hannah M, Lei, Pui-Wa, Jo-Pugh, Mary, Adamson, Maheen, Alda, Martin, Alonso-Lana, Silvia, Ambrogi, Sonia, Anderson, Tim J, Arango, Celso, Asarnow, Robert F, Avram, Mihai, Ayesa-Arriola, Rosa, Babikian, Talin, Banaj, Nerisa, Bird, Laura J, Borgwardt, Stefan, Brodtmann, Amy, Brosch, Katharina, Caeyenberghs, Karen, Calhoun, Vince D, Chiaravalloti, Nancy D, Cifu, David X, Crespo-Facorro, Benedicto, Dalrymple-Alford, John C, Dams-O’Connor, Kristen, Dannlowski, Udo, Darby, David, Davenport, Nicholas, DeLuca, John, Diaz-Caneja, Covadonga M, Disner, Seth G, Dobryakova, Ekaterina, Ehrlich, Stefan, Esopenko, Carrie, Ferrarelli, Fabio, Frank, Lea E, Franz, Carol, Fuentes-Claramonte, Paola, Genova, Helen, Giza, Christopher C, Goltermann, Janik, Grotegerd, Dominik, Gruber, Marius, Gutierrez-Zotes, Alfonso, Ha, Minji, Haavik, Jan, Hinkin, Charles, Hoskinson, Kristen R, Hubl, Daniela, Irimia, Andrei, Jansen, Andreas, Kaess, Michael, Kang, Xiaojian, Kenney, Kimbra, Keřková, Barbora, Khlif, Mohamed Salah, Kim, Minah, Kindler, Jochen, Kircher, Tilo, Knížková, Karolina, Kolskår, Knut K, Krch, Denise, Kremen, William S, Kuhn, Taylor, Kumari, Veena, Kwon, Jun Soo, Langella, Roberto, Laskowitz, Sarah, Lee, Jungha, Lengenfelder, Jean, Liebel, Spencer W, Liou-Johnson, Victoria, Lippa, Sara M, Løvstad, Marianne, Lundervold, Astri, Marotta, Cassandra, Marquardt, Craig A, Mattos, Paulo, Mayeli, Ahmad, McDonald, Carrie R, Meinert, Susanne, Melzer, Tracy R, Merchán-Naranjo, Jessica, Michel, Chantal, Morey, Rajendra A, Mwangi, Benson, Myall, Daniel J, Nenadić, Igor, Newsome, Mary R, Nunes, Abraham, O’Brien, Terence, Oertel, Viola, Ollinger, John, Olsen, Alexander, de la Foz, Victor Ortiz García, Ozmen, Mustafa, Pardoe, Heath, Parent, Marise, Piras, Fabrizio, Piras, Federica, Pomarol-Clotet, Edith, Repple, Jonathan, Richard, Geneviève, Rodriguez, Jonathan, Rodriguez, Mabel, Rootes-Murdy, Kelly, Rowland, Jared, Ryan, Nicholas P, Salvador, Raymond, Sanders, Anne-Marthe, Schmidt, Andre, Soares, Jair C, Spalleta, Gianfranco, Španiel, Filip, Stasenko, Alena, Stein, Frederike, Straube, Benjamin, Thames, April, Thomas-Odenthal, Florian, Thomopoulos, Sophia I, Tone, Erin, Torres, Ivan, Troyanskaya, Maya, Turner, Jessica A, Ulrichsen, Kristine M, Umpierrez, Guillermo, Vilella, Elisabet, Vivash, Lucy, Walker, William C, Werden, Emilio, Westlye, Lars T, Wild, Krista, Wroblewski, Adrian, Wu, Mon-Ju, Wylie, Glenn R, Yatham, Lakshmi N, Zunta-Soares, Giovana B, Thompson, Paul M, Tate, David F, Hillary, Frank G, Dennis, Emily L, Wilde, Elisabeth A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882238/
https://www.ncbi.nlm.nih.gov/pubmed/36712107
http://dx.doi.org/10.1101/2023.01.16.524331
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author Kennedy, Eamonn
Vadlamani, Shashank
Lindsey, Hannah M
Lei, Pui-Wa
Jo-Pugh, Mary
Adamson, Maheen
Alda, Martin
Alonso-Lana, Silvia
Ambrogi, Sonia
Anderson, Tim J
Arango, Celso
Asarnow, Robert F
Avram, Mihai
Ayesa-Arriola, Rosa
Babikian, Talin
Banaj, Nerisa
Bird, Laura J
Borgwardt, Stefan
Brodtmann, Amy
Brosch, Katharina
Caeyenberghs, Karen
Calhoun, Vince D
Chiaravalloti, Nancy D
Cifu, David X
Crespo-Facorro, Benedicto
Dalrymple-Alford, John C
Dams-O’Connor, Kristen
Dannlowski, Udo
Darby, David
Davenport, Nicholas
DeLuca, John
Diaz-Caneja, Covadonga M
Disner, Seth G
Dobryakova, Ekaterina
Ehrlich, Stefan
Esopenko, Carrie
Ferrarelli, Fabio
Frank, Lea E
Franz, Carol
Fuentes-Claramonte, Paola
Genova, Helen
Giza, Christopher C
Goltermann, Janik
Grotegerd, Dominik
Gruber, Marius
Gutierrez-Zotes, Alfonso
Ha, Minji
Haavik, Jan
Hinkin, Charles
Hoskinson, Kristen R
Hubl, Daniela
Irimia, Andrei
Jansen, Andreas
Kaess, Michael
Kang, Xiaojian
Kenney, Kimbra
Keřková, Barbora
Khlif, Mohamed Salah
Kim, Minah
Kindler, Jochen
Kircher, Tilo
Knížková, Karolina
Kolskår, Knut K
Krch, Denise
Kremen, William S
Kuhn, Taylor
Kumari, Veena
Kwon, Jun Soo
Langella, Roberto
Laskowitz, Sarah
Lee, Jungha
Lengenfelder, Jean
Liebel, Spencer W
Liou-Johnson, Victoria
Lippa, Sara M
Løvstad, Marianne
Lundervold, Astri
Marotta, Cassandra
Marquardt, Craig A
Mattos, Paulo
Mayeli, Ahmad
McDonald, Carrie R
Meinert, Susanne
Melzer, Tracy R
Merchán-Naranjo, Jessica
Michel, Chantal
Morey, Rajendra A
Mwangi, Benson
Myall, Daniel J
Nenadić, Igor
Newsome, Mary R
Nunes, Abraham
O’Brien, Terence
Oertel, Viola
Ollinger, John
Olsen, Alexander
de la Foz, Victor Ortiz García
Ozmen, Mustafa
Pardoe, Heath
Parent, Marise
Piras, Fabrizio
Piras, Federica
Pomarol-Clotet, Edith
Repple, Jonathan
Richard, Geneviève
Rodriguez, Jonathan
Rodriguez, Mabel
Rootes-Murdy, Kelly
Rowland, Jared
Ryan, Nicholas P
Salvador, Raymond
Sanders, Anne-Marthe
Schmidt, Andre
Soares, Jair C
Spalleta, Gianfranco
Španiel, Filip
Stasenko, Alena
Stein, Frederike
Straube, Benjamin
Thames, April
Thomas-Odenthal, Florian
Thomopoulos, Sophia I
Tone, Erin
Torres, Ivan
Troyanskaya, Maya
Turner, Jessica A
Ulrichsen, Kristine M
Umpierrez, Guillermo
Vilella, Elisabet
Vivash, Lucy
Walker, William C
Werden, Emilio
Westlye, Lars T
Wild, Krista
Wroblewski, Adrian
Wu, Mon-Ju
Wylie, Glenn R
Yatham, Lakshmi N
Zunta-Soares, Giovana B
Thompson, Paul M
Tate, David F
Hillary, Frank G
Dennis, Emily L
Wilde, Elisabeth A
author_facet Kennedy, Eamonn
Vadlamani, Shashank
Lindsey, Hannah M
Lei, Pui-Wa
Jo-Pugh, Mary
Adamson, Maheen
Alda, Martin
Alonso-Lana, Silvia
Ambrogi, Sonia
Anderson, Tim J
Arango, Celso
Asarnow, Robert F
Avram, Mihai
Ayesa-Arriola, Rosa
Babikian, Talin
Banaj, Nerisa
Bird, Laura J
Borgwardt, Stefan
Brodtmann, Amy
Brosch, Katharina
Caeyenberghs, Karen
Calhoun, Vince D
Chiaravalloti, Nancy D
Cifu, David X
Crespo-Facorro, Benedicto
Dalrymple-Alford, John C
Dams-O’Connor, Kristen
Dannlowski, Udo
Darby, David
Davenport, Nicholas
DeLuca, John
Diaz-Caneja, Covadonga M
Disner, Seth G
Dobryakova, Ekaterina
Ehrlich, Stefan
Esopenko, Carrie
Ferrarelli, Fabio
Frank, Lea E
Franz, Carol
Fuentes-Claramonte, Paola
Genova, Helen
Giza, Christopher C
Goltermann, Janik
Grotegerd, Dominik
Gruber, Marius
Gutierrez-Zotes, Alfonso
Ha, Minji
Haavik, Jan
Hinkin, Charles
Hoskinson, Kristen R
Hubl, Daniela
Irimia, Andrei
Jansen, Andreas
Kaess, Michael
Kang, Xiaojian
Kenney, Kimbra
Keřková, Barbora
Khlif, Mohamed Salah
Kim, Minah
Kindler, Jochen
Kircher, Tilo
Knížková, Karolina
Kolskår, Knut K
Krch, Denise
Kremen, William S
Kuhn, Taylor
Kumari, Veena
Kwon, Jun Soo
Langella, Roberto
Laskowitz, Sarah
Lee, Jungha
Lengenfelder, Jean
Liebel, Spencer W
Liou-Johnson, Victoria
Lippa, Sara M
Løvstad, Marianne
Lundervold, Astri
Marotta, Cassandra
Marquardt, Craig A
Mattos, Paulo
Mayeli, Ahmad
McDonald, Carrie R
Meinert, Susanne
Melzer, Tracy R
Merchán-Naranjo, Jessica
Michel, Chantal
Morey, Rajendra A
Mwangi, Benson
Myall, Daniel J
Nenadić, Igor
Newsome, Mary R
Nunes, Abraham
O’Brien, Terence
Oertel, Viola
Ollinger, John
Olsen, Alexander
de la Foz, Victor Ortiz García
Ozmen, Mustafa
Pardoe, Heath
Parent, Marise
Piras, Fabrizio
Piras, Federica
Pomarol-Clotet, Edith
Repple, Jonathan
Richard, Geneviève
Rodriguez, Jonathan
Rodriguez, Mabel
Rootes-Murdy, Kelly
Rowland, Jared
Ryan, Nicholas P
Salvador, Raymond
Sanders, Anne-Marthe
Schmidt, Andre
Soares, Jair C
Spalleta, Gianfranco
Španiel, Filip
Stasenko, Alena
Stein, Frederike
Straube, Benjamin
Thames, April
Thomas-Odenthal, Florian
Thomopoulos, Sophia I
Tone, Erin
Torres, Ivan
Troyanskaya, Maya
Turner, Jessica A
Ulrichsen, Kristine M
Umpierrez, Guillermo
Vilella, Elisabet
Vivash, Lucy
Walker, William C
Werden, Emilio
Westlye, Lars T
Wild, Krista
Wroblewski, Adrian
Wu, Mon-Ju
Wylie, Glenn R
Yatham, Lakshmi N
Zunta-Soares, Giovana B
Thompson, Paul M
Tate, David F
Hillary, Frank G
Dennis, Emily L
Wilde, Elisabeth A
author_sort Kennedy, Eamonn
collection PubMed
description Investigators in neuroscience have turned to Big Data to address replication and reliability issues by increasing sample sizes, statistical power, and representativeness of data. These efforts unveil new questions about integrating data arising from distinct sources and instruments. We focus on the most frequently assessed cognitive domain - memory testing - and demonstrate a process for reliable data harmonization across three common measures. We aggregated global raw data from 53 studies totaling N = 10,505 individuals. A mega-analysis was conducted using empirical bayes harmonization to remove site effects, followed by linear models adjusting for common covariates. A continuous item response theory (IRT) model estimated each individual’s latent verbal learning ability while accounting for item difficulties. Harmonization significantly reduced inter-site variance while preserving covariate effects, and our conversion tool is freely available online. This demonstrates that large-scale data sharing and harmonization initiatives can address reproducibility and integration challenges across the behavioral sciences.
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spelling pubmed-98822382023-01-28 Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium Kennedy, Eamonn Vadlamani, Shashank Lindsey, Hannah M Lei, Pui-Wa Jo-Pugh, Mary Adamson, Maheen Alda, Martin Alonso-Lana, Silvia Ambrogi, Sonia Anderson, Tim J Arango, Celso Asarnow, Robert F Avram, Mihai Ayesa-Arriola, Rosa Babikian, Talin Banaj, Nerisa Bird, Laura J Borgwardt, Stefan Brodtmann, Amy Brosch, Katharina Caeyenberghs, Karen Calhoun, Vince D Chiaravalloti, Nancy D Cifu, David X Crespo-Facorro, Benedicto Dalrymple-Alford, John C Dams-O’Connor, Kristen Dannlowski, Udo Darby, David Davenport, Nicholas DeLuca, John Diaz-Caneja, Covadonga M Disner, Seth G Dobryakova, Ekaterina Ehrlich, Stefan Esopenko, Carrie Ferrarelli, Fabio Frank, Lea E Franz, Carol Fuentes-Claramonte, Paola Genova, Helen Giza, Christopher C Goltermann, Janik Grotegerd, Dominik Gruber, Marius Gutierrez-Zotes, Alfonso Ha, Minji Haavik, Jan Hinkin, Charles Hoskinson, Kristen R Hubl, Daniela Irimia, Andrei Jansen, Andreas Kaess, Michael Kang, Xiaojian Kenney, Kimbra Keřková, Barbora Khlif, Mohamed Salah Kim, Minah Kindler, Jochen Kircher, Tilo Knížková, Karolina Kolskår, Knut K Krch, Denise Kremen, William S Kuhn, Taylor Kumari, Veena Kwon, Jun Soo Langella, Roberto Laskowitz, Sarah Lee, Jungha Lengenfelder, Jean Liebel, Spencer W Liou-Johnson, Victoria Lippa, Sara M Løvstad, Marianne Lundervold, Astri Marotta, Cassandra Marquardt, Craig A Mattos, Paulo Mayeli, Ahmad McDonald, Carrie R Meinert, Susanne Melzer, Tracy R Merchán-Naranjo, Jessica Michel, Chantal Morey, Rajendra A Mwangi, Benson Myall, Daniel J Nenadić, Igor Newsome, Mary R Nunes, Abraham O’Brien, Terence Oertel, Viola Ollinger, John Olsen, Alexander de la Foz, Victor Ortiz García Ozmen, Mustafa Pardoe, Heath Parent, Marise Piras, Fabrizio Piras, Federica Pomarol-Clotet, Edith Repple, Jonathan Richard, Geneviève Rodriguez, Jonathan Rodriguez, Mabel Rootes-Murdy, Kelly Rowland, Jared Ryan, Nicholas P Salvador, Raymond Sanders, Anne-Marthe Schmidt, Andre Soares, Jair C Spalleta, Gianfranco Španiel, Filip Stasenko, Alena Stein, Frederike Straube, Benjamin Thames, April Thomas-Odenthal, Florian Thomopoulos, Sophia I Tone, Erin Torres, Ivan Troyanskaya, Maya Turner, Jessica A Ulrichsen, Kristine M Umpierrez, Guillermo Vilella, Elisabet Vivash, Lucy Walker, William C Werden, Emilio Westlye, Lars T Wild, Krista Wroblewski, Adrian Wu, Mon-Ju Wylie, Glenn R Yatham, Lakshmi N Zunta-Soares, Giovana B Thompson, Paul M Tate, David F Hillary, Frank G Dennis, Emily L Wilde, Elisabeth A bioRxiv Article Investigators in neuroscience have turned to Big Data to address replication and reliability issues by increasing sample sizes, statistical power, and representativeness of data. These efforts unveil new questions about integrating data arising from distinct sources and instruments. We focus on the most frequently assessed cognitive domain - memory testing - and demonstrate a process for reliable data harmonization across three common measures. We aggregated global raw data from 53 studies totaling N = 10,505 individuals. A mega-analysis was conducted using empirical bayes harmonization to remove site effects, followed by linear models adjusting for common covariates. A continuous item response theory (IRT) model estimated each individual’s latent verbal learning ability while accounting for item difficulties. Harmonization significantly reduced inter-site variance while preserving covariate effects, and our conversion tool is freely available online. This demonstrates that large-scale data sharing and harmonization initiatives can address reproducibility and integration challenges across the behavioral sciences. Cold Spring Harbor Laboratory 2023-04-07 /pmc/articles/PMC9882238/ /pubmed/36712107 http://dx.doi.org/10.1101/2023.01.16.524331 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Kennedy, Eamonn
Vadlamani, Shashank
Lindsey, Hannah M
Lei, Pui-Wa
Jo-Pugh, Mary
Adamson, Maheen
Alda, Martin
Alonso-Lana, Silvia
Ambrogi, Sonia
Anderson, Tim J
Arango, Celso
Asarnow, Robert F
Avram, Mihai
Ayesa-Arriola, Rosa
Babikian, Talin
Banaj, Nerisa
Bird, Laura J
Borgwardt, Stefan
Brodtmann, Amy
Brosch, Katharina
Caeyenberghs, Karen
Calhoun, Vince D
Chiaravalloti, Nancy D
Cifu, David X
Crespo-Facorro, Benedicto
Dalrymple-Alford, John C
Dams-O’Connor, Kristen
Dannlowski, Udo
Darby, David
Davenport, Nicholas
DeLuca, John
Diaz-Caneja, Covadonga M
Disner, Seth G
Dobryakova, Ekaterina
Ehrlich, Stefan
Esopenko, Carrie
Ferrarelli, Fabio
Frank, Lea E
Franz, Carol
Fuentes-Claramonte, Paola
Genova, Helen
Giza, Christopher C
Goltermann, Janik
Grotegerd, Dominik
Gruber, Marius
Gutierrez-Zotes, Alfonso
Ha, Minji
Haavik, Jan
Hinkin, Charles
Hoskinson, Kristen R
Hubl, Daniela
Irimia, Andrei
Jansen, Andreas
Kaess, Michael
Kang, Xiaojian
Kenney, Kimbra
Keřková, Barbora
Khlif, Mohamed Salah
Kim, Minah
Kindler, Jochen
Kircher, Tilo
Knížková, Karolina
Kolskår, Knut K
Krch, Denise
Kremen, William S
Kuhn, Taylor
Kumari, Veena
Kwon, Jun Soo
Langella, Roberto
Laskowitz, Sarah
Lee, Jungha
Lengenfelder, Jean
Liebel, Spencer W
Liou-Johnson, Victoria
Lippa, Sara M
Løvstad, Marianne
Lundervold, Astri
Marotta, Cassandra
Marquardt, Craig A
Mattos, Paulo
Mayeli, Ahmad
McDonald, Carrie R
Meinert, Susanne
Melzer, Tracy R
Merchán-Naranjo, Jessica
Michel, Chantal
Morey, Rajendra A
Mwangi, Benson
Myall, Daniel J
Nenadić, Igor
Newsome, Mary R
Nunes, Abraham
O’Brien, Terence
Oertel, Viola
Ollinger, John
Olsen, Alexander
de la Foz, Victor Ortiz García
Ozmen, Mustafa
Pardoe, Heath
Parent, Marise
Piras, Fabrizio
Piras, Federica
Pomarol-Clotet, Edith
Repple, Jonathan
Richard, Geneviève
Rodriguez, Jonathan
Rodriguez, Mabel
Rootes-Murdy, Kelly
Rowland, Jared
Ryan, Nicholas P
Salvador, Raymond
Sanders, Anne-Marthe
Schmidt, Andre
Soares, Jair C
Spalleta, Gianfranco
Španiel, Filip
Stasenko, Alena
Stein, Frederike
Straube, Benjamin
Thames, April
Thomas-Odenthal, Florian
Thomopoulos, Sophia I
Tone, Erin
Torres, Ivan
Troyanskaya, Maya
Turner, Jessica A
Ulrichsen, Kristine M
Umpierrez, Guillermo
Vilella, Elisabet
Vivash, Lucy
Walker, William C
Werden, Emilio
Westlye, Lars T
Wild, Krista
Wroblewski, Adrian
Wu, Mon-Ju
Wylie, Glenn R
Yatham, Lakshmi N
Zunta-Soares, Giovana B
Thompson, Paul M
Tate, David F
Hillary, Frank G
Dennis, Emily L
Wilde, Elisabeth A
Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium
title Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium
title_full Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium
title_fullStr Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium
title_full_unstemmed Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium
title_short Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium
title_sort bridging big data: procedures for combining non-equivalent cognitive measures from the enigma consortium
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882238/
https://www.ncbi.nlm.nih.gov/pubmed/36712107
http://dx.doi.org/10.1101/2023.01.16.524331
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