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Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires
Helical homopolymers of multiheme cytochromes catalyze biogeochemically significant electron transfers with a reported 10(3)-fold variation in conductivity. Herein, classical molecular dynamics and hybrid quantum/classical molecular mechanics are used to elucidate the structural determinants of the...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Cold Spring Harbor Laboratory
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882360/ https://www.ncbi.nlm.nih.gov/pubmed/36712098 http://dx.doi.org/10.1101/2023.01.21.525004 |
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author | Guberman-Pfeffer, Matthew J. |
author_facet | Guberman-Pfeffer, Matthew J. |
author_sort | Guberman-Pfeffer, Matthew J. |
collection | PubMed |
description | Helical homopolymers of multiheme cytochromes catalyze biogeochemically significant electron transfers with a reported 10(3)-fold variation in conductivity. Herein, classical molecular dynamics and hybrid quantum/classical molecular mechanics are used to elucidate the structural determinants of the redox potentials and conductivities of the tetra-, hexa-, and octaheme outer-membrane cytochromes E, S, and Z, respectively, from Geobacter sulfurreducens. Second-sphere electrostatic interactions acting on minimally polarized heme centers are found to regulate redox potentials over a computed 0.5-V range. However, the energetics of redox conduction are largely robust to the structural diversity: Single-step electronic couplings (⟨H(mn)⟩), reaction free energies [Formula: see text] , and reorganization energies (λ(mn)) are always respectively <|0.026|, <|0.26|, and between 0.5 – 1.0 eV. With these conserved parameter ranges, redox conductivity differed by less than a factor of 10 among the ‘nanowires’ and is sufficient to meet the demands of cellular respiration if 10(2) – 10(3) ‘nanowires’ are expressed. The ‘nanowires’ are proposed to be differentiated by the protein packaging to interface with a great variety of environments, and not by conductivity, because the rate-limiting electron transfers are elsewhere in the respiratory process. Conducting-probe atomic force microscopy measurements that find conductivities 10(3)-10(6)-fold more than cellular demands are suggested to report on functionality that is either not used or not accessible under physiological conditions. The experimentally measured difference in conductivity between Omc- S and Z is suggested to not be an intrinsic feature of the CryoEM-resolved structures. |
format | Online Article Text |
id | pubmed-9882360 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-98823602023-01-28 Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires Guberman-Pfeffer, Matthew J. bioRxiv Article Helical homopolymers of multiheme cytochromes catalyze biogeochemically significant electron transfers with a reported 10(3)-fold variation in conductivity. Herein, classical molecular dynamics and hybrid quantum/classical molecular mechanics are used to elucidate the structural determinants of the redox potentials and conductivities of the tetra-, hexa-, and octaheme outer-membrane cytochromes E, S, and Z, respectively, from Geobacter sulfurreducens. Second-sphere electrostatic interactions acting on minimally polarized heme centers are found to regulate redox potentials over a computed 0.5-V range. However, the energetics of redox conduction are largely robust to the structural diversity: Single-step electronic couplings (⟨H(mn)⟩), reaction free energies [Formula: see text] , and reorganization energies (λ(mn)) are always respectively <|0.026|, <|0.26|, and between 0.5 – 1.0 eV. With these conserved parameter ranges, redox conductivity differed by less than a factor of 10 among the ‘nanowires’ and is sufficient to meet the demands of cellular respiration if 10(2) – 10(3) ‘nanowires’ are expressed. The ‘nanowires’ are proposed to be differentiated by the protein packaging to interface with a great variety of environments, and not by conductivity, because the rate-limiting electron transfers are elsewhere in the respiratory process. Conducting-probe atomic force microscopy measurements that find conductivities 10(3)-10(6)-fold more than cellular demands are suggested to report on functionality that is either not used or not accessible under physiological conditions. The experimentally measured difference in conductivity between Omc- S and Z is suggested to not be an intrinsic feature of the CryoEM-resolved structures. Cold Spring Harbor Laboratory 2023-01-22 /pmc/articles/PMC9882360/ /pubmed/36712098 http://dx.doi.org/10.1101/2023.01.21.525004 Text en https://creativecommons.org/licenses/by-nd/4.0/This work is licensed under a Creative Commons Attribution-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, and only so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Guberman-Pfeffer, Matthew J. Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires |
title | Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires |
title_full | Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires |
title_fullStr | Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires |
title_full_unstemmed | Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires |
title_short | Structural Determinants of Redox Conduction Favor Robustness over Tunability in Microbial Cytochrome Nanowires |
title_sort | structural determinants of redox conduction favor robustness over tunability in microbial cytochrome nanowires |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882360/ https://www.ncbi.nlm.nih.gov/pubmed/36712098 http://dx.doi.org/10.1101/2023.01.21.525004 |
work_keys_str_mv | AT gubermanpfeffermatthewj structuraldeterminantsofredoxconductionfavorrobustnessovertunabilityinmicrobialcytochromenanowires |