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Improved Quantitative Parameter Estimation for Prostate T2 Relaxometry using Convolutional Neural Networks

This work seeks to evaluate multiple methods for quantitative parameter estimation from standard T(2) mapping acquisitions in the prostate. The T(2) estimation performance of methods based on neural networks (NN) was quantitatively compared to that of conventional curve fitting techniques. Large phy...

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Autores principales: Bolan, Patrick J., Saunders, Sara L., Kay, Kendrick, Gross, Mitchell, Akcakaya, Mehmet, Metzger, Gregory J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882442/
https://www.ncbi.nlm.nih.gov/pubmed/36711813
http://dx.doi.org/10.1101/2023.01.11.23284194
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author Bolan, Patrick J.
Saunders, Sara L.
Kay, Kendrick
Gross, Mitchell
Akcakaya, Mehmet
Metzger, Gregory J.
author_facet Bolan, Patrick J.
Saunders, Sara L.
Kay, Kendrick
Gross, Mitchell
Akcakaya, Mehmet
Metzger, Gregory J.
author_sort Bolan, Patrick J.
collection PubMed
description This work seeks to evaluate multiple methods for quantitative parameter estimation from standard T(2) mapping acquisitions in the prostate. The T(2) estimation performance of methods based on neural networks (NN) was quantitatively compared to that of conventional curve fitting techniques. Large physics-based synthetic datasets simulating T(2) mapping acquisitions were generated for training NNs and for quantitative performance comparisons. Ten combinations of different NN architectures, training strategies, and training corpora were implemented and compared with four different curve fitting strategies. All methods were compared quantitatively using synthetic data with known ground truth, and further compared on in vivo test data, with and without noise augmentation, to evaluate feasibility and noise robustness. In the evaluation on synthetic data, a convolutional neural network (CNN), trained in a supervised fashion using synthetic data generated from naturalistic images, showed the highest overall accuracy and precision amongst all the methods. On in vivo data, this best-performing method produced low-noise T(2) maps and showed the least deterioration with increasing input noise levels. This study showed that a CNN, trained with synthetic data in a supervised manner, may provide superior T(2) estimation performance compared to conventional curve fitting, especially in low signal-to-noise regions.
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spelling pubmed-98824422023-01-28 Improved Quantitative Parameter Estimation for Prostate T2 Relaxometry using Convolutional Neural Networks Bolan, Patrick J. Saunders, Sara L. Kay, Kendrick Gross, Mitchell Akcakaya, Mehmet Metzger, Gregory J. medRxiv Article This work seeks to evaluate multiple methods for quantitative parameter estimation from standard T(2) mapping acquisitions in the prostate. The T(2) estimation performance of methods based on neural networks (NN) was quantitatively compared to that of conventional curve fitting techniques. Large physics-based synthetic datasets simulating T(2) mapping acquisitions were generated for training NNs and for quantitative performance comparisons. Ten combinations of different NN architectures, training strategies, and training corpora were implemented and compared with four different curve fitting strategies. All methods were compared quantitatively using synthetic data with known ground truth, and further compared on in vivo test data, with and without noise augmentation, to evaluate feasibility and noise robustness. In the evaluation on synthetic data, a convolutional neural network (CNN), trained in a supervised fashion using synthetic data generated from naturalistic images, showed the highest overall accuracy and precision amongst all the methods. On in vivo data, this best-performing method produced low-noise T(2) maps and showed the least deterioration with increasing input noise levels. This study showed that a CNN, trained with synthetic data in a supervised manner, may provide superior T(2) estimation performance compared to conventional curve fitting, especially in low signal-to-noise regions. Cold Spring Harbor Laboratory 2023-03-29 /pmc/articles/PMC9882442/ /pubmed/36711813 http://dx.doi.org/10.1101/2023.01.11.23284194 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Bolan, Patrick J.
Saunders, Sara L.
Kay, Kendrick
Gross, Mitchell
Akcakaya, Mehmet
Metzger, Gregory J.
Improved Quantitative Parameter Estimation for Prostate T2 Relaxometry using Convolutional Neural Networks
title Improved Quantitative Parameter Estimation for Prostate T2 Relaxometry using Convolutional Neural Networks
title_full Improved Quantitative Parameter Estimation for Prostate T2 Relaxometry using Convolutional Neural Networks
title_fullStr Improved Quantitative Parameter Estimation for Prostate T2 Relaxometry using Convolutional Neural Networks
title_full_unstemmed Improved Quantitative Parameter Estimation for Prostate T2 Relaxometry using Convolutional Neural Networks
title_short Improved Quantitative Parameter Estimation for Prostate T2 Relaxometry using Convolutional Neural Networks
title_sort improved quantitative parameter estimation for prostate t2 relaxometry using convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882442/
https://www.ncbi.nlm.nih.gov/pubmed/36711813
http://dx.doi.org/10.1101/2023.01.11.23284194
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