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Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence

BACKGROUND: The clinical documentation of cystoscopy includes visual and textual materials. However, the secondary use of visual cystoscopic data for educational and research purposes remains limited due to inefficient data management in routine clinical practice. METHODS: A conceptual framework was...

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Autores principales: Eminaga, Okyaz, Lee, Timothy Jiyong, Ge, Jessie, Shkolyar, Eugene, Laurie, Mark, Long, Jin, Hockman, Lukas Graham, Liao, Joseph C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cornell University 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882574/
https://www.ncbi.nlm.nih.gov/pubmed/36713258
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author Eminaga, Okyaz
Lee, Timothy Jiyong
Ge, Jessie
Shkolyar, Eugene
Laurie, Mark
Long, Jin
Hockman, Lukas Graham
Liao, Joseph C.
author_facet Eminaga, Okyaz
Lee, Timothy Jiyong
Ge, Jessie
Shkolyar, Eugene
Laurie, Mark
Long, Jin
Hockman, Lukas Graham
Liao, Joseph C.
author_sort Eminaga, Okyaz
collection PubMed
description BACKGROUND: The clinical documentation of cystoscopy includes visual and textual materials. However, the secondary use of visual cystoscopic data for educational and research purposes remains limited due to inefficient data management in routine clinical practice. METHODS: A conceptual framework was designed to document cystoscopy in a standardized manner with three major sections: data management, annotation management, and utilization management. A Swiss-cheese model was proposed for quality control and root cause analyses. We defined the infrastructure required to implement the framework with respect to FAIR (findable, accessible, interoperable, reusable) principles. We applied two scenarios exemplifying data sharing for research and educational projects to ensure the compliance with FAIR principles. RESULTS: The framework was successfully implemented while following FAIR principles. The cystoscopy atlas produced from the framework could be presented in an educational web portal; a total of 68 full-length qualitative videos and corresponding annotation data were sharable for artificial intelligence projects covering frame classification and segmentation problems at case, lesion and frame levels. CONCLUSION: Our study shows that the proposed framework facilitates the storage of the visual documentation in a standardized manner and enables FAIR data for education and artificial intelligence research.
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spelling pubmed-98825742023-01-28 Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence Eminaga, Okyaz Lee, Timothy Jiyong Ge, Jessie Shkolyar, Eugene Laurie, Mark Long, Jin Hockman, Lukas Graham Liao, Joseph C. ArXiv Article BACKGROUND: The clinical documentation of cystoscopy includes visual and textual materials. However, the secondary use of visual cystoscopic data for educational and research purposes remains limited due to inefficient data management in routine clinical practice. METHODS: A conceptual framework was designed to document cystoscopy in a standardized manner with three major sections: data management, annotation management, and utilization management. A Swiss-cheese model was proposed for quality control and root cause analyses. We defined the infrastructure required to implement the framework with respect to FAIR (findable, accessible, interoperable, reusable) principles. We applied two scenarios exemplifying data sharing for research and educational projects to ensure the compliance with FAIR principles. RESULTS: The framework was successfully implemented while following FAIR principles. The cystoscopy atlas produced from the framework could be presented in an educational web portal; a total of 68 full-length qualitative videos and corresponding annotation data were sharable for artificial intelligence projects covering frame classification and segmentation problems at case, lesion and frame levels. CONCLUSION: Our study shows that the proposed framework facilitates the storage of the visual documentation in a standardized manner and enables FAIR data for education and artificial intelligence research. Cornell University 2023-01-18 /pmc/articles/PMC9882574/ /pubmed/36713258 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Eminaga, Okyaz
Lee, Timothy Jiyong
Ge, Jessie
Shkolyar, Eugene
Laurie, Mark
Long, Jin
Hockman, Lukas Graham
Liao, Joseph C.
Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence
title Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence
title_full Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence
title_fullStr Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence
title_full_unstemmed Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence
title_short Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence
title_sort conceptual framework and documentation standards of cystoscopic media content for artificial intelligence
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882574/
https://www.ncbi.nlm.nih.gov/pubmed/36713258
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