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Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes
Shape2SAS is a web application that allows researchers and students to build intuition and understanding of small-angle scattering. It is available at https://somo.chem.utk.edu/shape2sas. The user defines a model of arbitrary shape by combining geometrical subunits, and Shape2SAS then calculates and...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cornell University
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882588/ https://www.ncbi.nlm.nih.gov/pubmed/36713243 |
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author | Larsen, Andreas Haahr Brookes, Emre Pedersen, Martin Cramer Kirkensgaard, Jacob Judas Kain |
author_facet | Larsen, Andreas Haahr Brookes, Emre Pedersen, Martin Cramer Kirkensgaard, Jacob Judas Kain |
author_sort | Larsen, Andreas Haahr |
collection | PubMed |
description | Shape2SAS is a web application that allows researchers and students to build intuition and understanding of small-angle scattering. It is available at https://somo.chem.utk.edu/shape2sas. The user defines a model of arbitrary shape by combining geometrical subunits, and Shape2SAS then calculates and displays the scattering intensity, the pair distance distribution as well as a visualization of the user-defined shape. Simulated data with realistic noise are also generated. We demonstrate how Shape2SAS can calculate and display the different scattering patterns for various geometrical shapes, such as spheres and cylinders. We also demonstrate how the effect of structure factors can be visualized. Finally, we show how multi-contrast particles can readily be generated, and how the calculated scattering may be used to validate and visualize analytical models generated in analysis software for fitting small-angle scattering data. |
format | Online Article Text |
id | pubmed-9882588 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cornell University |
record_format | MEDLINE/PubMed |
spelling | pubmed-98825882023-01-28 Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes Larsen, Andreas Haahr Brookes, Emre Pedersen, Martin Cramer Kirkensgaard, Jacob Judas Kain ArXiv Article Shape2SAS is a web application that allows researchers and students to build intuition and understanding of small-angle scattering. It is available at https://somo.chem.utk.edu/shape2sas. The user defines a model of arbitrary shape by combining geometrical subunits, and Shape2SAS then calculates and displays the scattering intensity, the pair distance distribution as well as a visualization of the user-defined shape. Simulated data with realistic noise are also generated. We demonstrate how Shape2SAS can calculate and display the different scattering patterns for various geometrical shapes, such as spheres and cylinders. We also demonstrate how the effect of structure factors can be visualized. Finally, we show how multi-contrast particles can readily be generated, and how the calculated scattering may be used to validate and visualize analytical models generated in analysis software for fitting small-angle scattering data. Cornell University 2023-01-12 /pmc/articles/PMC9882588/ /pubmed/36713243 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Larsen, Andreas Haahr Brookes, Emre Pedersen, Martin Cramer Kirkensgaard, Jacob Judas Kain Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes |
title | Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes |
title_full | Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes |
title_fullStr | Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes |
title_full_unstemmed | Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes |
title_short | Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes |
title_sort | shape2sas – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882588/ https://www.ncbi.nlm.nih.gov/pubmed/36713243 |
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