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Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes

Shape2SAS is a web application that allows researchers and students to build intuition and understanding of small-angle scattering. It is available at https://somo.chem.utk.edu/shape2sas. The user defines a model of arbitrary shape by combining geometrical subunits, and Shape2SAS then calculates and...

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Autores principales: Larsen, Andreas Haahr, Brookes, Emre, Pedersen, Martin Cramer, Kirkensgaard, Jacob Judas Kain
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cornell University 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882588/
https://www.ncbi.nlm.nih.gov/pubmed/36713243
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author Larsen, Andreas Haahr
Brookes, Emre
Pedersen, Martin Cramer
Kirkensgaard, Jacob Judas Kain
author_facet Larsen, Andreas Haahr
Brookes, Emre
Pedersen, Martin Cramer
Kirkensgaard, Jacob Judas Kain
author_sort Larsen, Andreas Haahr
collection PubMed
description Shape2SAS is a web application that allows researchers and students to build intuition and understanding of small-angle scattering. It is available at https://somo.chem.utk.edu/shape2sas. The user defines a model of arbitrary shape by combining geometrical subunits, and Shape2SAS then calculates and displays the scattering intensity, the pair distance distribution as well as a visualization of the user-defined shape. Simulated data with realistic noise are also generated. We demonstrate how Shape2SAS can calculate and display the different scattering patterns for various geometrical shapes, such as spheres and cylinders. We also demonstrate how the effect of structure factors can be visualized. Finally, we show how multi-contrast particles can readily be generated, and how the calculated scattering may be used to validate and visualize analytical models generated in analysis software for fitting small-angle scattering data.
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spelling pubmed-98825882023-01-28 Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes Larsen, Andreas Haahr Brookes, Emre Pedersen, Martin Cramer Kirkensgaard, Jacob Judas Kain ArXiv Article Shape2SAS is a web application that allows researchers and students to build intuition and understanding of small-angle scattering. It is available at https://somo.chem.utk.edu/shape2sas. The user defines a model of arbitrary shape by combining geometrical subunits, and Shape2SAS then calculates and displays the scattering intensity, the pair distance distribution as well as a visualization of the user-defined shape. Simulated data with realistic noise are also generated. We demonstrate how Shape2SAS can calculate and display the different scattering patterns for various geometrical shapes, such as spheres and cylinders. We also demonstrate how the effect of structure factors can be visualized. Finally, we show how multi-contrast particles can readily be generated, and how the calculated scattering may be used to validate and visualize analytical models generated in analysis software for fitting small-angle scattering data. Cornell University 2023-01-12 /pmc/articles/PMC9882588/ /pubmed/36713243 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Larsen, Andreas Haahr
Brookes, Emre
Pedersen, Martin Cramer
Kirkensgaard, Jacob Judas Kain
Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes
title Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes
title_full Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes
title_fullStr Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes
title_full_unstemmed Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes
title_short Shape2SAS – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes
title_sort shape2sas – a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882588/
https://www.ncbi.nlm.nih.gov/pubmed/36713243
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