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Heterogeneity in the M. tuberculosis β-Lactamase Inhibition by Sulbactam

For decades, researchers have been determined to elucidate essential enzymatic functions on the atomic lengths scale by tracing atomic positions in real time. Our work builds on new possibilities unleashed by mix-and-inject serial crystallography (MISC) (1–5) at X-ray free electron laser facilities....

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Autores principales: Schmidt, Marius, Malla, Tek Narsingh, Zielinski, Kara, Aldama, Luis, Bajt, Sasa, Feliz, Denisse, Hayes, Brandon, Hunter, Mark, Kupitz, Christopher, Lisova, Stella, Knoska, Juraj, Martin-Garcia, Jose, Mariani, Valerio, Pandey, Suraj, Poudyal, Ishwor, Sierra, Raymond, Tolstikova, Alexandra, Yefanov, Oleksandr, Yoon, Ching Hong, Ourmazd, Abbas, Fromme, Petra, Schwander, Peter, Barty, Anton, Chapman, Henry, Stojković, Emina, Batyuk, Alexander, Boutet, Sébastien, Phillips, George, Pollack, Lois
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Journal Experts 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882615/
https://www.ncbi.nlm.nih.gov/pubmed/36712138
http://dx.doi.org/10.21203/rs.3.rs-2334665/v1
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author Schmidt, Marius
Malla, Tek Narsingh
Zielinski, Kara
Aldama, Luis
Bajt, Sasa
Feliz, Denisse
Hayes, Brandon
Hunter, Mark
Kupitz, Christopher
Lisova, Stella
Knoska, Juraj
Martin-Garcia, Jose
Mariani, Valerio
Pandey, Suraj
Poudyal, Ishwor
Sierra, Raymond
Tolstikova, Alexandra
Yefanov, Oleksandr
Yoon, Ching Hong
Ourmazd, Abbas
Fromme, Petra
Schwander, Peter
Barty, Anton
Chapman, Henry
Stojković, Emina
Batyuk, Alexander
Boutet, Sébastien
Phillips, George
Pollack, Lois
author_facet Schmidt, Marius
Malla, Tek Narsingh
Zielinski, Kara
Aldama, Luis
Bajt, Sasa
Feliz, Denisse
Hayes, Brandon
Hunter, Mark
Kupitz, Christopher
Lisova, Stella
Knoska, Juraj
Martin-Garcia, Jose
Mariani, Valerio
Pandey, Suraj
Poudyal, Ishwor
Sierra, Raymond
Tolstikova, Alexandra
Yefanov, Oleksandr
Yoon, Ching Hong
Ourmazd, Abbas
Fromme, Petra
Schwander, Peter
Barty, Anton
Chapman, Henry
Stojković, Emina
Batyuk, Alexander
Boutet, Sébastien
Phillips, George
Pollack, Lois
author_sort Schmidt, Marius
collection PubMed
description For decades, researchers have been determined to elucidate essential enzymatic functions on the atomic lengths scale by tracing atomic positions in real time. Our work builds on new possibilities unleashed by mix-and-inject serial crystallography (MISC) (1–5) at X-ray free electron laser facilities. In this approach, enzymatic reactions are triggered by mixing substrate or ligand solutions with enzyme microcrystals (6). Here, we report in atomic detail and with millisecond time-resolution how the Mycobacterium tuberculosis enzyme BlaC is inhibited by sulbactam (SUB). Our results reveal ligand binding heterogeneity, ligand gating (7–9), cooperativity, induced fit (10,11) and conformational selection (11–13) all from the same set of MISC data, detailing how SUB approaches the catalytic clefts and binds to the enzyme non-covalently before reacting to a trans-enamine. This was made possible in part by the application of the singular value decomposition (14) to the MISC data using a newly developed program that remains functional even if unit cell parameters change during the reaction.
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spelling pubmed-98826152023-01-28 Heterogeneity in the M. tuberculosis β-Lactamase Inhibition by Sulbactam Schmidt, Marius Malla, Tek Narsingh Zielinski, Kara Aldama, Luis Bajt, Sasa Feliz, Denisse Hayes, Brandon Hunter, Mark Kupitz, Christopher Lisova, Stella Knoska, Juraj Martin-Garcia, Jose Mariani, Valerio Pandey, Suraj Poudyal, Ishwor Sierra, Raymond Tolstikova, Alexandra Yefanov, Oleksandr Yoon, Ching Hong Ourmazd, Abbas Fromme, Petra Schwander, Peter Barty, Anton Chapman, Henry Stojković, Emina Batyuk, Alexander Boutet, Sébastien Phillips, George Pollack, Lois Res Sq Article For decades, researchers have been determined to elucidate essential enzymatic functions on the atomic lengths scale by tracing atomic positions in real time. Our work builds on new possibilities unleashed by mix-and-inject serial crystallography (MISC) (1–5) at X-ray free electron laser facilities. In this approach, enzymatic reactions are triggered by mixing substrate or ligand solutions with enzyme microcrystals (6). Here, we report in atomic detail and with millisecond time-resolution how the Mycobacterium tuberculosis enzyme BlaC is inhibited by sulbactam (SUB). Our results reveal ligand binding heterogeneity, ligand gating (7–9), cooperativity, induced fit (10,11) and conformational selection (11–13) all from the same set of MISC data, detailing how SUB approaches the catalytic clefts and binds to the enzyme non-covalently before reacting to a trans-enamine. This was made possible in part by the application of the singular value decomposition (14) to the MISC data using a newly developed program that remains functional even if unit cell parameters change during the reaction. American Journal Experts 2023-01-10 /pmc/articles/PMC9882615/ /pubmed/36712138 http://dx.doi.org/10.21203/rs.3.rs-2334665/v1 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Schmidt, Marius
Malla, Tek Narsingh
Zielinski, Kara
Aldama, Luis
Bajt, Sasa
Feliz, Denisse
Hayes, Brandon
Hunter, Mark
Kupitz, Christopher
Lisova, Stella
Knoska, Juraj
Martin-Garcia, Jose
Mariani, Valerio
Pandey, Suraj
Poudyal, Ishwor
Sierra, Raymond
Tolstikova, Alexandra
Yefanov, Oleksandr
Yoon, Ching Hong
Ourmazd, Abbas
Fromme, Petra
Schwander, Peter
Barty, Anton
Chapman, Henry
Stojković, Emina
Batyuk, Alexander
Boutet, Sébastien
Phillips, George
Pollack, Lois
Heterogeneity in the M. tuberculosis β-Lactamase Inhibition by Sulbactam
title Heterogeneity in the M. tuberculosis β-Lactamase Inhibition by Sulbactam
title_full Heterogeneity in the M. tuberculosis β-Lactamase Inhibition by Sulbactam
title_fullStr Heterogeneity in the M. tuberculosis β-Lactamase Inhibition by Sulbactam
title_full_unstemmed Heterogeneity in the M. tuberculosis β-Lactamase Inhibition by Sulbactam
title_short Heterogeneity in the M. tuberculosis β-Lactamase Inhibition by Sulbactam
title_sort heterogeneity in the m. tuberculosis β-lactamase inhibition by sulbactam
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882615/
https://www.ncbi.nlm.nih.gov/pubmed/36712138
http://dx.doi.org/10.21203/rs.3.rs-2334665/v1
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