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Application of Elastic Net Regression for Modeling COVID-19 Sociodemographic Risk Factors

OBJECTIVES: COVID-19 has been at the forefront of global concern since its emergence in December of 2019. Determining the social factors that drive case incidence is paramount to mitigating disease spread. We gathered data from the Social Vulnerability Index (SVI) along with Democratic voting percen...

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Autores principales: Moxley, Tristan A., Johnson-Leung, Jennifer, Seamon, Erich, Williams, Christopher, Ridenhour, Benjamin J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882619/
https://www.ncbi.nlm.nih.gov/pubmed/36711957
http://dx.doi.org/10.1101/2023.01.19.23284288
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author Moxley, Tristan A.
Johnson-Leung, Jennifer
Seamon, Erich
Williams, Christopher
Ridenhour, Benjamin J.
author_facet Moxley, Tristan A.
Johnson-Leung, Jennifer
Seamon, Erich
Williams, Christopher
Ridenhour, Benjamin J.
author_sort Moxley, Tristan A.
collection PubMed
description OBJECTIVES: COVID-19 has been at the forefront of global concern since its emergence in December of 2019. Determining the social factors that drive case incidence is paramount to mitigating disease spread. We gathered data from the Social Vulnerability Index (SVI) along with Democratic voting percentage to attempt to understand which county-level sociodemographic metrics had a significant correlation with case rate for COVID-19. METHODS: We used elastic net regression due to issues with variable collinearity and model overfitting. Our modelling framework included using the ten Health and Human Services regions as submodels for the two time periods 22 March 2020 to 15 June 2021 (prior to the Delta time period) and 15 June 2021 to 1 November 2021 (the Delta time period). RESULTS: Statistically, elastic net improved prediction when compared to multiple regression, as almost every HHS model consistently had a lower root mean square error (RMSE) and satisfactory R(2) coefficients. These analyses show that the percentage of minorities, disabled individuals, individuals living in group quarters, and individuals who voted Democratic correlated significantly with COVID-19 attack rate as determined by Variable Importance Plots (VIPs). CONCLUSIONS: The percentage of minorities per county correlated positively with cases in the earlier time period and negatively in the later time period, which complements previous research. In contrast, higher percentages of disabled individuals per county correlated negatively in the earlier time period. Counties with an above average percentage of group quarters experienced a high attack rate early which then diminished in significance after the primary vaccine rollout. Higher Democratic voting consistently correlated negatively with cases, coinciding with previous findings regarding a partisan divide in COVID-19 cases at the county level. Our findings can assist policymakers in distributing resources to more vulnerable counties in future pandemics based on SVI.
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spelling pubmed-98826192023-01-28 Application of Elastic Net Regression for Modeling COVID-19 Sociodemographic Risk Factors Moxley, Tristan A. Johnson-Leung, Jennifer Seamon, Erich Williams, Christopher Ridenhour, Benjamin J. medRxiv Article OBJECTIVES: COVID-19 has been at the forefront of global concern since its emergence in December of 2019. Determining the social factors that drive case incidence is paramount to mitigating disease spread. We gathered data from the Social Vulnerability Index (SVI) along with Democratic voting percentage to attempt to understand which county-level sociodemographic metrics had a significant correlation with case rate for COVID-19. METHODS: We used elastic net regression due to issues with variable collinearity and model overfitting. Our modelling framework included using the ten Health and Human Services regions as submodels for the two time periods 22 March 2020 to 15 June 2021 (prior to the Delta time period) and 15 June 2021 to 1 November 2021 (the Delta time period). RESULTS: Statistically, elastic net improved prediction when compared to multiple regression, as almost every HHS model consistently had a lower root mean square error (RMSE) and satisfactory R(2) coefficients. These analyses show that the percentage of minorities, disabled individuals, individuals living in group quarters, and individuals who voted Democratic correlated significantly with COVID-19 attack rate as determined by Variable Importance Plots (VIPs). CONCLUSIONS: The percentage of minorities per county correlated positively with cases in the earlier time period and negatively in the later time period, which complements previous research. In contrast, higher percentages of disabled individuals per county correlated negatively in the earlier time period. Counties with an above average percentage of group quarters experienced a high attack rate early which then diminished in significance after the primary vaccine rollout. Higher Democratic voting consistently correlated negatively with cases, coinciding with previous findings regarding a partisan divide in COVID-19 cases at the county level. Our findings can assist policymakers in distributing resources to more vulnerable counties in future pandemics based on SVI. Cold Spring Harbor Laboratory 2023-01-20 /pmc/articles/PMC9882619/ /pubmed/36711957 http://dx.doi.org/10.1101/2023.01.19.23284288 Text en https://creativecommons.org/licenses/by-nc/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License (https://creativecommons.org/licenses/by-nc/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Moxley, Tristan A.
Johnson-Leung, Jennifer
Seamon, Erich
Williams, Christopher
Ridenhour, Benjamin J.
Application of Elastic Net Regression for Modeling COVID-19 Sociodemographic Risk Factors
title Application of Elastic Net Regression for Modeling COVID-19 Sociodemographic Risk Factors
title_full Application of Elastic Net Regression for Modeling COVID-19 Sociodemographic Risk Factors
title_fullStr Application of Elastic Net Regression for Modeling COVID-19 Sociodemographic Risk Factors
title_full_unstemmed Application of Elastic Net Regression for Modeling COVID-19 Sociodemographic Risk Factors
title_short Application of Elastic Net Regression for Modeling COVID-19 Sociodemographic Risk Factors
title_sort application of elastic net regression for modeling covid-19 sociodemographic risk factors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9882619/
https://www.ncbi.nlm.nih.gov/pubmed/36711957
http://dx.doi.org/10.1101/2023.01.19.23284288
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