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A prognostic model based on necroptosis-related genes for prognosis and therapy in bladder cancer
Bladder cancer, one of the most prevalent malignant cancers, has high rate of recurrence and metastasis. Owing to genomic instability and high-level heterogeneity of bladder cancer, chemotherapy and immunotherapy drugs sensitivity and lack of prognostic markers, the prognosis of bladder cancer is un...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9883845/ https://www.ncbi.nlm.nih.gov/pubmed/36709279 http://dx.doi.org/10.1186/s12894-023-01175-z |
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author | Wang, Zeyi Huang, Zhengnan Cao, Xiangqian Zhang, Fang Cai, Jinming Tang, Pengfei Yang, Chenkai Li, Shengzhou Yu, Dong Yan, Yilin Shen, Bing |
author_facet | Wang, Zeyi Huang, Zhengnan Cao, Xiangqian Zhang, Fang Cai, Jinming Tang, Pengfei Yang, Chenkai Li, Shengzhou Yu, Dong Yan, Yilin Shen, Bing |
author_sort | Wang, Zeyi |
collection | PubMed |
description | Bladder cancer, one of the most prevalent malignant cancers, has high rate of recurrence and metastasis. Owing to genomic instability and high-level heterogeneity of bladder cancer, chemotherapy and immunotherapy drugs sensitivity and lack of prognostic markers, the prognosis of bladder cancer is unclear. Necroptosis is a programmed modality of necrotic cell death in a caspase-independent form. Despite the fact that necroptosis plays a critical role in tumor growth, cancer metastasis, and cancer patient prognosis, necroptosis-related gene sets have rarely been studied in bladder cancer. As a result, the development of new necroptosis-related prognostic indicators for bladder cancer patients is critical. Herein, we assessed the necroptosis landscape of bladder cancer patients from The Cancer Genome Atlas database and classified them into two unique necroptosis-related patterns, using the consensus clustering. Then, using five prognosis-related genes, we constructed a prognostic model (risk score), which contained 5 genes (ANXA1, DOK7, FKBP10, MAP1B and SPOCD1). And a nomogram model was also developed to offer the clinic with a more useful prognostic indicator. We found that risk score was significantly associated with clinicopathological characteristics, TIME, and tumor mutation burden in patients with bladder cancer. Moreover, risk score was a valid guide for immunotherapy, chemotherapy, and targeted drugs. In our study, DOK7 was chosen to further verify our prognosis model, and functional assays indicated that knockdown the expression of DOK7 could prompt bladder cancer proliferation and migration. Our work demonstrated the potential role of prognostic model based on necroptosis genes in the prognosis, immune landscape and response efficacy of immunotherapy of bladder cancer. |
format | Online Article Text |
id | pubmed-9883845 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-98838452023-01-29 A prognostic model based on necroptosis-related genes for prognosis and therapy in bladder cancer Wang, Zeyi Huang, Zhengnan Cao, Xiangqian Zhang, Fang Cai, Jinming Tang, Pengfei Yang, Chenkai Li, Shengzhou Yu, Dong Yan, Yilin Shen, Bing BMC Urol Research Bladder cancer, one of the most prevalent malignant cancers, has high rate of recurrence and metastasis. Owing to genomic instability and high-level heterogeneity of bladder cancer, chemotherapy and immunotherapy drugs sensitivity and lack of prognostic markers, the prognosis of bladder cancer is unclear. Necroptosis is a programmed modality of necrotic cell death in a caspase-independent form. Despite the fact that necroptosis plays a critical role in tumor growth, cancer metastasis, and cancer patient prognosis, necroptosis-related gene sets have rarely been studied in bladder cancer. As a result, the development of new necroptosis-related prognostic indicators for bladder cancer patients is critical. Herein, we assessed the necroptosis landscape of bladder cancer patients from The Cancer Genome Atlas database and classified them into two unique necroptosis-related patterns, using the consensus clustering. Then, using five prognosis-related genes, we constructed a prognostic model (risk score), which contained 5 genes (ANXA1, DOK7, FKBP10, MAP1B and SPOCD1). And a nomogram model was also developed to offer the clinic with a more useful prognostic indicator. We found that risk score was significantly associated with clinicopathological characteristics, TIME, and tumor mutation burden in patients with bladder cancer. Moreover, risk score was a valid guide for immunotherapy, chemotherapy, and targeted drugs. In our study, DOK7 was chosen to further verify our prognosis model, and functional assays indicated that knockdown the expression of DOK7 could prompt bladder cancer proliferation and migration. Our work demonstrated the potential role of prognostic model based on necroptosis genes in the prognosis, immune landscape and response efficacy of immunotherapy of bladder cancer. BioMed Central 2023-01-28 /pmc/articles/PMC9883845/ /pubmed/36709279 http://dx.doi.org/10.1186/s12894-023-01175-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Wang, Zeyi Huang, Zhengnan Cao, Xiangqian Zhang, Fang Cai, Jinming Tang, Pengfei Yang, Chenkai Li, Shengzhou Yu, Dong Yan, Yilin Shen, Bing A prognostic model based on necroptosis-related genes for prognosis and therapy in bladder cancer |
title | A prognostic model based on necroptosis-related genes for prognosis and therapy in bladder cancer |
title_full | A prognostic model based on necroptosis-related genes for prognosis and therapy in bladder cancer |
title_fullStr | A prognostic model based on necroptosis-related genes for prognosis and therapy in bladder cancer |
title_full_unstemmed | A prognostic model based on necroptosis-related genes for prognosis and therapy in bladder cancer |
title_short | A prognostic model based on necroptosis-related genes for prognosis and therapy in bladder cancer |
title_sort | prognostic model based on necroptosis-related genes for prognosis and therapy in bladder cancer |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9883845/ https://www.ncbi.nlm.nih.gov/pubmed/36709279 http://dx.doi.org/10.1186/s12894-023-01175-z |
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