Cargando…
Structural Properties of Metal–Organic Frameworks at Elevated Thermal Conditions via a Combined Density Functional Tight Binding Molecular Dynamics (DFTB MD) Approach
[Image: see text] The performance of different density functional tight binding (DFTB) methods for the description of six increasingly complex metal–organic framework (MOF) compounds have been assessed. In particular the self-consistent charge density functional tight binding (SCC DFTB) approach uti...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9884096/ https://www.ncbi.nlm.nih.gov/pubmed/36721770 http://dx.doi.org/10.1021/acs.jpcc.2c05103 |
_version_ | 1784879645232988160 |
---|---|
author | Purtscher, Felix R. S. Christanell, Leo Schulte, Moritz Seiwald, Stefan Rödl, Markus Ober, Isabell Maruschka, Leah K. Khoder, Hassan Schwartz, Heidi A. Bendeif, El-Eulmi Hofer, Thomas S. |
author_facet | Purtscher, Felix R. S. Christanell, Leo Schulte, Moritz Seiwald, Stefan Rödl, Markus Ober, Isabell Maruschka, Leah K. Khoder, Hassan Schwartz, Heidi A. Bendeif, El-Eulmi Hofer, Thomas S. |
author_sort | Purtscher, Felix R. S. |
collection | PubMed |
description | [Image: see text] The performance of different density functional tight binding (DFTB) methods for the description of six increasingly complex metal–organic framework (MOF) compounds have been assessed. In particular the self-consistent charge density functional tight binding (SCC DFTB) approach utilizing the 3ob and matsci parameter sets have been considered for a set of four Zn-based and two Al-based MOF systems. Moreover, the extended tight binding for geometries, frequencies, and noncovalent interactions (GFN2-xTB) approach has been considered as well. In addition to the application of energy minimizations of the respective unit cells, molecular dynamics (MD) simulations at constant temperature and pressure conditions (298.15 K, 1.013 bar) have been carried out to assess the performance of the different DFTB methods at nonzero thermal conditions. In order to obtain the XRD patterns from the MD simulations, a flexible workflow to obtain time-averaged XRD patterns from (in this study 5000) individual snapshots taken at regular intervals over the simulation trajectory has been applied. In addition, the comparison of pair-distribution functions (PDFs) directly accessible from the simulation data shows very good agreement with experimental reference data obtained via measurements employing synchrotron radiation in case of MOF-5. The comparison of the lattice constants and the associated X-ray diffraction (XRD) patterns with the experimental reference data demonstrate, that the SCC DFTB approach provides a highly efficient and accurate description of the target systems. |
format | Online Article Text |
id | pubmed-9884096 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-98840962023-01-29 Structural Properties of Metal–Organic Frameworks at Elevated Thermal Conditions via a Combined Density Functional Tight Binding Molecular Dynamics (DFTB MD) Approach Purtscher, Felix R. S. Christanell, Leo Schulte, Moritz Seiwald, Stefan Rödl, Markus Ober, Isabell Maruschka, Leah K. Khoder, Hassan Schwartz, Heidi A. Bendeif, El-Eulmi Hofer, Thomas S. J Phys Chem C Nanomater Interfaces [Image: see text] The performance of different density functional tight binding (DFTB) methods for the description of six increasingly complex metal–organic framework (MOF) compounds have been assessed. In particular the self-consistent charge density functional tight binding (SCC DFTB) approach utilizing the 3ob and matsci parameter sets have been considered for a set of four Zn-based and two Al-based MOF systems. Moreover, the extended tight binding for geometries, frequencies, and noncovalent interactions (GFN2-xTB) approach has been considered as well. In addition to the application of energy minimizations of the respective unit cells, molecular dynamics (MD) simulations at constant temperature and pressure conditions (298.15 K, 1.013 bar) have been carried out to assess the performance of the different DFTB methods at nonzero thermal conditions. In order to obtain the XRD patterns from the MD simulations, a flexible workflow to obtain time-averaged XRD patterns from (in this study 5000) individual snapshots taken at regular intervals over the simulation trajectory has been applied. In addition, the comparison of pair-distribution functions (PDFs) directly accessible from the simulation data shows very good agreement with experimental reference data obtained via measurements employing synchrotron radiation in case of MOF-5. The comparison of the lattice constants and the associated X-ray diffraction (XRD) patterns with the experimental reference data demonstrate, that the SCC DFTB approach provides a highly efficient and accurate description of the target systems. American Chemical Society 2023-01-10 /pmc/articles/PMC9884096/ /pubmed/36721770 http://dx.doi.org/10.1021/acs.jpcc.2c05103 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Purtscher, Felix R. S. Christanell, Leo Schulte, Moritz Seiwald, Stefan Rödl, Markus Ober, Isabell Maruschka, Leah K. Khoder, Hassan Schwartz, Heidi A. Bendeif, El-Eulmi Hofer, Thomas S. Structural Properties of Metal–Organic Frameworks at Elevated Thermal Conditions via a Combined Density Functional Tight Binding Molecular Dynamics (DFTB MD) Approach |
title | Structural Properties
of Metal–Organic Frameworks
at Elevated Thermal Conditions via a Combined Density Functional Tight
Binding Molecular Dynamics (DFTB MD) Approach |
title_full | Structural Properties
of Metal–Organic Frameworks
at Elevated Thermal Conditions via a Combined Density Functional Tight
Binding Molecular Dynamics (DFTB MD) Approach |
title_fullStr | Structural Properties
of Metal–Organic Frameworks
at Elevated Thermal Conditions via a Combined Density Functional Tight
Binding Molecular Dynamics (DFTB MD) Approach |
title_full_unstemmed | Structural Properties
of Metal–Organic Frameworks
at Elevated Thermal Conditions via a Combined Density Functional Tight
Binding Molecular Dynamics (DFTB MD) Approach |
title_short | Structural Properties
of Metal–Organic Frameworks
at Elevated Thermal Conditions via a Combined Density Functional Tight
Binding Molecular Dynamics (DFTB MD) Approach |
title_sort | structural properties
of metal–organic frameworks
at elevated thermal conditions via a combined density functional tight
binding molecular dynamics (dftb md) approach |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9884096/ https://www.ncbi.nlm.nih.gov/pubmed/36721770 http://dx.doi.org/10.1021/acs.jpcc.2c05103 |
work_keys_str_mv | AT purtscherfelixrs structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT christanellleo structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT schultemoritz structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT seiwaldstefan structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT rodlmarkus structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT oberisabell structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT maruschkaleahk structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT khoderhassan structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT schwartzheidia structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT bendeifeleulmi structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach AT hoferthomass structuralpropertiesofmetalorganicframeworksatelevatedthermalconditionsviaacombineddensityfunctionaltightbindingmoleculardynamicsdftbmdapproach |