Cargando…
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples
BACKGROUND: The accurate identification of SARS-CoV-2 (SC2) variants and estimation of their abundance in mixed population samples (e.g., air or wastewater) is imperative for successful surveillance of community level trends. Assessing the performance of SC2 variant composition estimators (VCEs) sho...
Autores principales: | Kayikcioglu, Tunc, Amirzadegan, Jasmine, Rand, Hugh, Tesfaldet, Bereket, Timme, Ruth E., Pettengill, James B. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9884472/ https://www.ncbi.nlm.nih.gov/pubmed/36721781 http://dx.doi.org/10.7717/peerj.14596 |
Ejemplares similares
-
An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella
por: Pettengill, James B., et al.
Publicado: (2014) -
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
por: Timme, Ruth E., et al.
Publicado: (2017) -
Power analysis and sample size estimation for RNA-Seq differential expression
por: Ching, Travers, et al.
Publicado: (2014) -
Estimating the frequency of multiplets in single-cell RNA sequencing from cell-mixing experiments
por: Bloom, Jesse D.
Publicado: (2018) -
Differential bicodon usage in lowly and highly abundant proteins
por: Diambra, Luis A.
Publicado: (2017)